YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166012, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.98
Transmembrane Helix	10	32	0.88
Non-Cytoplasmic	33	37	0.75
Transmembrane Helix	38	57	0.92
Cytoplasmic	58	71	0.74
Transmembrane Helix	72	91	0.93
Non-Cytoplasmic	92	98	0.75
Transmembrane Helix	99	120	0.93
Cytoplasmic	121	160	0.97
Transmembrane Helix	161	182	0.85
Non-Cytoplasmic	183	188	0.81
Transmembrane Helix	189	206	0.53
Cytoplasmic	207	207	0.20
Transmembrane Helix	208	233	0.83
Non-Cytoplasmic	234	258	0.45
Transmembrane Helix	259	279	0.75
Cytoplasmic	280	309	0.60
Transmembrane Helix	310	332	0.88
Non-Cytoplasmic	333	342	0.56
Transmembrane Helix	343	370	0.82
Cytoplasmic	371	377	0.53
Transmembrane Helix	378	401	0.87
Non-Cytoplasmic	402	408	0.51
Transmembrane Helix	409	429	0.93
Cytoplasmic	430	449	0.58
Transmembrane Helix	450	471	0.94
Non-Cytoplasmic	472	489	0.52
Transmembrane Helix	490	507	0.40
Cytoplasmic	508	512	0.50
Transmembrane Helix	513	533	0.88
Non-Cytoplasmic	534	547	0.60
Transmembrane Helix	548	570	0.64
Cytoplasmic	571	596	0.92
Transmembrane Helix	597	619	0.89
Non-Cytoplasmic	620	639	0.80
Transmembrane Helix	640	656	0.95
Cytoplasmic	657	664	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKKQNLPEL TLRGLILGSI LTIIFTASNV YLGLKVGLTF SSSIPAVVIS MAVLSLFKTS  60
   61 NILENNMVQT QASAAGTLSS VIFVIPGLFM CGYWSEFPLW QTFMICLCGG GLGVLFTIPL 120
  121 RRTMVVESKL AYPEGRAAAE ILKVANKDQS SKKGKQGIKE IALGSFIAAI FSLLSNGFKL 180
  181 AASESNFAFI WNKMAFGFSM GYSLALLGAG YLVGLAGAIA LFVGMFLAWG IFTPYLSNFE 240
  241 FDSAKNAVDL ASSVWSSKVR LIGTGAIAIA ALWTLIELLK PVIEGIKEIV KNVKITNQEK 300
  301 NERTNIDLSL KSIFILFVLM VVGLFITFYS FVEDANLSIY YQMLFSFVGT LVSVLIGFFV 360
  361 AAACGYMAGL VGSSSSPISG IGLIGVIISS IVFLVLGVEL FQDPMLSKFA VALAIFTTSV 420
  421 ILATAAISND NLQDLKTGHL VGATPWKQQV ALLVGCVFGA LAIVPVLNLL YQAYGFVGAM 480
  481 PREGMDASSA LAAPQANLMS TIAQGIFHHN IEWGYMALGV FVGILMIIID KILKGTQKMS 540
  541 LPPLAVGIGI YLPPAVNIPL VIGGILKYIV MQHLTKKYAK NSHKEEKLAS CEQRGTLFAS 600
  601 GLIVGESIFG VIIAGITVFS VSMGGSENPL ALNLANFHDS ELFALIFFVG VVLYFIKRIV 660
  661 KKDA