YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57165899, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.56
Transmembrane Helix	14	39	0.85
Cytoplasmic	40	45	0.58
Transmembrane Helix	46	67	0.86
Non-Cytoplasmic	68	89	0.64
Transmembrane Helix	90	117	0.75
Cytoplasmic	118	130	0.60
Transmembrane Helix	131	153	0.71
Non-Cytoplasmic	154	167	0.76
Transmembrane Helix	168	190	0.91
Cytoplasmic	191	226	0.84
Transmembrane Helix	227	246	0.94
Non-Cytoplasmic	247	261	0.69
Transmembrane Helix	262	279	0.96
Cytoplasmic	280	290	0.73
Transmembrane Helix	291	311	0.88
Non-Cytoplasmic	312	332	0.73
Transmembrane Helix	333	366	0.69
Cytoplasmic	367	374	0.54
Transmembrane Helix	375	397	0.88
Non-Cytoplasmic	398	417	0.61
Transmembrane Helix	418	438	0.94
Cytoplasmic	439	442	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIILQVIVLL GAIFIGIRLG GIAIGYAGGL GVVILGLVLG MKPGNIPWDV ILIIAAAIAA  60
   61 ISAMQQAGGL DYMVRVTEKI LRSSPKFINY LAPACGWLLT ILAGTGNAVF SLMPVVVDVA 120
  121 KSQNIKPSVP LSLMVVSSQI GITASPVSAA VVYMSGVLEP LGWNYPTLIG IWISTTFVAC 180
  181 MLAAFIVSLI TPMDLSKDSV YQERLKAGLV KDAGAVLHGE DKPGAKLSVV IFLITVLAVV 240
  241 LYATAISSNI KWIDPVVVPR DAAIMSFLLT AATLITWLCK VEPGKILDTS VFKSGMTACV 300
  301 CVFGVAWLGN TFVAGHEASI KEVAGDWVKQ TPAMLAVAFF FASMLLYSQA ATAKAIVPVI 360
  361 ITALGISAAN PHDSYMLVAC FAAVSALFVL PTYPTLLGAV QMDDTGTTRI GKFIFNHSFF 420
  421 IPGVLAIAIA VVLGFVLAPM LI