YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57236980, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.64
Transmembrane Helix	10	28	0.88
Non-Cytoplasmic	29	32	0.62
Transmembrane Helix	33	52	0.94
Cytoplasmic	53	60	0.61
Transmembrane Helix	61	80	0.91
Non-Cytoplasmic	81	100	0.68
Transmembrane Helix	101	124	0.86
Cytoplasmic	125	146	0.65
Transmembrane Helix	147	170	0.80
Non-Cytoplasmic	171	184	0.78
Transmembrane Helix	185	206	0.86
Cytoplasmic	207	246	0.93
Transmembrane Helix	247	266	0.95
Non-Cytoplasmic	267	293	0.88
Transmembrane Helix	294	316	0.89
Cytoplasmic	317	327	0.87
Transmembrane Helix	328	351	0.83
Non-Cytoplasmic	352	368	0.84
Transmembrane Helix	369	385	0.70
Cytoplasmic	386	392	0.45
Transmembrane Helix	393	419	0.78
Non-Cytoplasmic	420	448	0.68
Transmembrane Helix	449	469	0.94
Cytoplasmic	470	474	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLTSLSEG GQFAIQIIIV LICLFYGAKK GGIALGLLGG IGILMLVFTF HIKPGKPAID  60
   61 VMLTILAVVV ASATLQASGG LDVMLQIAER ILRRNPKFLT ILAPFVTCFL TILCGTGHVV 120
  121 YTIMPIIYDI AIKNGIRPER PMAAASISSQ MGIIASPVSV AVVSLTALLL NANHKLAGFD 180
  181 GYINLLQITI PSTLFGVLCV GIFSWFRGKD LDKDEVFQEK LKDPEFKKYV YGDSKTLLGV 240
  241 KLPKSNWVAM WIFLGAIALV ALLGVFDFLR PNWGQVVKNG IPQVDALGNP KMDVLSMVSV 300
  301 IQMFMLLAGS LIIIFTKTDA KKIGSNEIFK SGMIALVAVF GISWMADTMF AVHTPMMKAA 360
  361 LGDIVKEHPW TYAVMLLLIS KFVNSQAAAI SAFVPLALGI GVEPGAIVAF AAACYGYYIL 420
  421 PTYPSDLATI QFDRSGTTHI GKFVINHSFI LPGLIGVITS CIAGYFIAMA AGYL