YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57165771, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.84
Transmembrane Helix	33	48	0.83
Non-Cytoplasmic	49	59	0.77
Transmembrane Helix	60	82	0.91
Cytoplasmic	83	90	0.91
Transmembrane Helix	91	111	0.94
Non-Cytoplasmic	112	117	0.80
Transmembrane Helix	118	141	0.89
Cytoplasmic	142	152	0.90
Transmembrane Helix	153	173	0.95
Non-Cytoplasmic	174	179	0.81
Transmembrane Helix	180	200	0.94
Cytoplasmic	201	228	0.96
Transmembrane Helix	229	252	0.92
Non-Cytoplasmic	253	262	0.80
Transmembrane Helix	263	281	0.97
Cytoplasmic	282	290	0.86
Transmembrane Helix	291	309	0.96
Non-Cytoplasmic	310	337	0.95
Transmembrane Helix	338	360	0.91
Cytoplasmic	361	369	0.90
Transmembrane Helix	370	391	0.91
Non-Cytoplasmic	392	419	0.91
Transmembrane Helix	420	444	0.83
Cytoplasmic	445	455	0.87
Transmembrane Helix	456	476	0.93
Non-Cytoplasmic	477	487	0.80
Transmembrane Helix	488	507	0.94
Cytoplasmic	508	517	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNVKNLDT SFFGHPKPLL SLSLTELWER FSFYGIRPLL YLFMIASFEK SGMNLKPEEA  60
   61 SAIMGIFASC LYLAALPGGW LADNYLGQKR AILLGALTIA FGHLCIAFSY FNNKMIFVGM 120
  121 VFLVIGTGLF KTCASVMVGM LYKKNDARRD SGFTLFYMCF NFGAFVAPLI CGFLQKEYGW 180
  181 HFGFGAGGIG MLLAVIIFYL KTMPDLKEFD EKVGIDSTWD RPSKKSKNAF YIIIVSGIVL 240
  241 LGAIFLILGG FIKLDAQVIN KNIILTILAC AGIYFLYLFA FTSLKIEEKR NLIIFIVLFL 300
  301 AAALFWSVYE QQYTSFNFFA EKLTDKTILN YEIPTIWFQS LGGLFVILFA PFSAFIWTIC 360
  361 AKNNKEISSI IKFALGLLGA ALAFLIMALA SNHAISLNGD ANTLRENLEN SSQIILVSPW 420
  421 WLVSSFLLMV LGELCLSPVG LSIMTKIAPN LIKSQVMGLW FVASALGNAL AGFIGGKASE 480
  481 ENIAYLPNLF YQCMWILLGA VIILLILKKP INKILKN