YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166341, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.98
Transmembrane Helix	16	36	0.89
Non-Cytoplasmic	37	53	0.82
Transmembrane Helix	54	74	0.88
Cytoplasmic	75	84	0.83
Transmembrane Helix	85	106	0.88
Non-Cytoplasmic	107	114	0.69
Transmembrane Helix	115	136	0.90
Cytoplasmic	137	144	0.85
Transmembrane Helix	145	167	0.91
Non-Cytoplasmic	168	179	0.85
Transmembrane Helix	180	200	0.95
Cytoplasmic	201	241	0.97
Transmembrane Helix	242	264	0.89
Non-Cytoplasmic	265	279	0.83
Transmembrane Helix	280	299	0.91
Cytoplasmic	300	307	0.80
Transmembrane Helix	308	328	0.92
Non-Cytoplasmic	329	333	0.75
Transmembrane Helix	334	354	0.94
Cytoplasmic	355	364	0.81
Transmembrane Helix	365	387	0.89
Non-Cytoplasmic	388	398	0.76
Transmembrane Helix	399	418	0.94
Cytoplasmic	419	428	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHANSIKLE LVCKKISWRI LPLIVLMFCL SMLDRTNISF VKSHIEIDAG IGEAAYALGA  60
   61 GIFFIGYAIF EVPSNLFLHK LGAKIWLSRI MITWGLVTMA MIFIQGEISF YVLRFLLGLT 120
  121 EAGFSPGIIL YLSYFFPAIY RSKVYGIYQM GVPIAFVFGS LISGFILDYT PNIYFKNWQW 180
  181 MFLIEGGITV LVGIFCLFYL DSHPKDAKWL DIKEKDILLK HIEISNTKAK DYSIKDIFKS 240
  241 ILVWKFVFVY FCIQLSVYGV LFYLPSKIAQ ILQINVGFEV GLLNAIPWIF VFIALPIFTS 300
  301 LADKKHSWNL HAILFLLLAS LSMIASTFVT NLAAFLFFIS LAAIGFIVIQ PIFWNLPTQV 360
  361 LKGKGAAAAI ALIGSLGNLG GFVAPTLKTY IENHFGVEFG LIVLALIAIL GVLVLIHLKI 420
  421 TLNLDKGE