YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82658188, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMYGQILHHQ GREEDLVNLN IGGIHHKVER CVLLRFPHTR VAQLIQCHSD AAILELCDDY  60
   61 SPTEQEYYFD RSPQVFHCVL NFYRTGHFHT LEELCVFCFS QEIEYWGLCE LDLDACCLEW 120
  121 FLERKDEHEL NSSGQSSKNA SSGEISVTSE DLWKSEGMRC SDVRKLMWET LEDPQHSRCS 180
  181 RGVAAVSVLV ILISILAMCV HSLPEFRYQT DGEHSVLDSV ELFCIVFFSV EFFLRVIAAP 240
  241 QPLRFLGNPL NMIDVASILP FYITLAVERL DEEDKEENQS LVNMGRVVQV LRLMRSFRVL 300
  301 KLARHSEGMR AFGETLMNCQ CEVGLLVLFI TVGISFFSTF IYYTEKEEAS SQLSSIPICW 360
  361 WWGIISMTTV GYGDVYPLTV AGRIVATVCI LCGLLVISLP ITIIMNNFSK YFEKNRKCLS 420
  421 EAKA

Type	Start	End	Confidence
Cytoplasmic	1	181	0.72
Transmembrane Helix	182	204	0.87
Non-Cytoplasmic	205	216	0.66
Transmembrane Helix	217	238	0.78
Cytoplasmic	239	244	0.60
Transmembrane Helix	245	264	0.41
Non-Cytoplasmic	265	322	0.71
Transmembrane Helix	323	343	0.91
Cytoplasmic	344	355	0.63
Transmembrane Helix	356	376	0.84
Non-Cytoplasmic	377	383	0.60
Transmembrane Helix	384	406	0.92
Cytoplasmic	407	424	0.77