YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166452, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNEMNLKEV LIRFKPFYKR YWKQFAIAIF GMILASGGTA GSFYALEPIL NYIFVEKNEA  60
   61 LLYTVPFLLV LMYFFKNLGT YLQSFYVSFI GTDMLKVLRA RVLKNILRLD MDFFKRYRSG 120
  121 ELVSRCTNDI NALQSIVSNI IPDFFRELLT AIGLLAVVLY QSPTLAFFAL VILPLAIFPL 180
  181 VWFAKKLKKY ARNIQETNSD LLSYLGEIFS NIELIKANDN EKKESDKFAK HNDALCKLNL 240
  241 KSARIDALTS PLMDMIGSVG VAVVIIVGGR EVINGSMSVG SFISFVSALF AIYTPLKRLS 300
  301 SLYGKLQGAV AASERTFYLL DLEPQIKGGS KELKNIEKIS FENVEFAYEN PHKSVLKGVN 360
  361 FDFVKGQMLA LVGTSGGGKS SIINLLMYFY EKQKGKILLN QEDISTFTIE SLHAKIGLVT 420
  421 QNIYLFNDSF AANIAYSEEL EEEKVVQALK LANACEFVKE MGGIWAEVKE HGKNLSGGQK 480
  481 QRIAIARALY KNPDVLIFDE ATSALDNESE KAIVKTIENL KQDRLILVVA HRLSTIENAD 540
  541 KIVVLDKGKV LAIGKDEELL QTCSLYQKFK SKEKTKPSFS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	44	0.92
Non-Cytoplasmic	45	59	0.89
Transmembrane Helix	60	90	0.52
Cytoplasmic	91	142	0.75
Transmembrane Helix	143	160	0.73
Non-Cytoplasmic	161	164	0.72
Transmembrane Helix	165	184	0.94
Cytoplasmic	185	246	0.96
Transmembrane Helix	247	269	0.82
Non-Cytoplasmic	270	275	0.70
Transmembrane Helix	276	296	0.89
Cytoplasmic	297	580	0.82