YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238103, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.45
Transmembrane Helix	5	22	0.82
Cytoplasmic	23	28	0.46
Transmembrane Helix	29	46	0.53
Non-Cytoplasmic	47	53	0.78
Transmembrane Helix	54	73	0.93
Cytoplasmic	74	83	0.83
Transmembrane Helix	84	106	0.91
Non-Cytoplasmic	107	112	0.79
Transmembrane Helix	113	133	0.92
Cytoplasmic	134	145	0.91
Transmembrane Helix	146	167	0.90
Non-Cytoplasmic	168	176	0.84
Transmembrane Helix	177	196	0.95
Cytoplasmic	197	205	0.74
Transmembrane Helix	206	229	0.80
Non-Cytoplasmic	230	233	0.61
Transmembrane Helix	234	252	0.85
Cytoplasmic	253	262	0.78
Transmembrane Helix	263	283	0.85
Non-Cytoplasmic	284	290	0.81
Transmembrane Helix	291	314	0.93
Cytoplasmic	315	323	0.76
Transmembrane Helix	324	344	0.88
Non-Cytoplasmic	345	351	0.81
Transmembrane Helix	352	371	0.92
Cytoplasmic	372	541	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNFLEIFLI TVAIAIVLNV IFKKFEIPTI IGYIAAGEII SEIYHLSGKG EITHIAEFGI  60
   61 VFLMFTIGLE FSFKHLMAMK QEVFLNGSLQ MLTCGFVFML LAIGILGLGD KSATIVGFAL 120
  121 ALSSTAVVLK ILNDNGDINE QYGRKALGIL LFQDIAVIPL LLLVDIFSSN NQNIEKLLFT 180
  181 TLISALILIT LLFFIGKYLV DRIFRLIIHT SSQEIFISTV LFMVIGASFL ANYFGFSYSL 240
  241 GAFIAGALIA ETKYKHKIEA DLIPFRDLLL GLFFITVGMQ IQLDVVAQNW FLIIVLTLLV 300
  301 MALKFGIVFG FLFLYTKKRV ALKTAFAIAQ IGEFALAIFS LLQAKNMLDI KTSQILIVVS 360
  361 ILTMIITPFI LNNIRKITNV VEDIALNTNA VQNIDSNIKL KNHLVVFGYG RLGQEVVQKI 420
  421 KNTGVPYLVL ESDLNLVELG VSRGENVVFA NAAQEETLKI ANIEECAVAI ITVTNEAKLE 480
  481 ILCQVLANYP KPIDTIIHVN GTLKKMLFSS IDENIRIIRS EKVIARNLVQ EALECRIHKN 540
  541 T