YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238193, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.71
Transmembrane Helix	5	22	0.87
Non-Cytoplasmic	23	37	0.66
Transmembrane Helix	38	64	0.82
Cytoplasmic	65	72	0.81
Transmembrane Helix	73	93	0.94
Non-Cytoplasmic	94	112	0.83
Transmembrane Helix	113	133	0.90
Cytoplasmic	134	143	0.81
Transmembrane Helix	144	163	0.92
Non-Cytoplasmic	164	179	0.81
Transmembrane Helix	180	198	0.89
Cytoplasmic	199	215	0.64
Transmembrane Helix	216	232	0.73
Non-Cytoplasmic	233	237	0.56
Transmembrane Helix	238	260	0.76
Cytoplasmic	261	295	0.71
Transmembrane Helix	296	315	0.76
Non-Cytoplasmic	316	319	0.74
Transmembrane Helix	320	340	0.91
Cytoplasmic	341	349	0.85
Transmembrane Helix	350	370	0.91
Non-Cytoplasmic	371	395	0.94
Transmembrane Helix	396	415	0.94
Cytoplasmic	416	427	0.84
Transmembrane Helix	428	447	0.93
Non-Cytoplasmic	448	458	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYFSLEFSI LMIAFFAIYW TFKNNYKIQN ILILIFSYII YILINPYFAL VLFIYTFFIH  60
   61 YFALLIFVRR KRYIFATCIA FIILNLCFFK YFPSIKGSVD EILNFFGLEF LNIDLVLPIG 120
  121 ISFYTFTSIT YLVEVYQKRR LESFLNLATF LSFFPTLLSG PIMRSSFFFE QAYQKREFKH 180
  181 ANLIIILLVF GIVKKVLIAN YLGIYAKSIL DFPQSYNFIQ LLSAIYAYAI QIYCDFSGYV 240
  241 DLVCAFALML GFTLPPNFNM PYLAKNLKDF WARWHISLST FIRDYIYIPL GGNRKGMPRT 300
  301 IVNILIAFIL SGMWHGNTLA FIVWGLLHGI GIVFIHLLAL SKFSLQKIPA LGRFLTFQFV 360
  361 CFTWIFFYYS KNLEDAIEYF KACYYNFFQI PSYNDIYMLV AFGVLFMIYP LFINFKEYCI 420
  421 KILNLTPFLL KPFIIAFILL LVFAFMPDGI PDFIYSSF