YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71002356, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	94	0.69
Transmembrane Helix	95	116	0.77
Non-Cytoplasmic	117	168	0.43
Transmembrane Helix	169	191	0.63
Cytoplasmic	192	202	0.79
Transmembrane Helix	203	224	0.88
Non-Cytoplasmic	225	231	0.61
Transmembrane Helix	232	249	0.91
Cytoplasmic	250	269	0.90
Transmembrane Helix	270	291	0.86
Non-Cytoplasmic	292	310	0.78
Transmembrane Helix	311	330	0.87
Cytoplasmic	331	343	0.79
Transmembrane Helix	344	365	0.87
Non-Cytoplasmic	366	417	0.95
Transmembrane Helix	418	439	0.94
Cytoplasmic	440	470	0.93
Transmembrane Helix	471	491	0.95
Non-Cytoplasmic	492	497	0.76
Transmembrane Helix	498	518	0.90
Cytoplasmic	519	546	0.58
Transmembrane Helix	547	564	0.54
Non-Cytoplasmic	565	580	0.43
Transmembrane Helix	581	605	0.77
Cytoplasmic	606	623	0.43
Transmembrane Helix	624	643	0.59
Non-Cytoplasmic	644	651	0.45
Transmembrane Helix	652	670	0.96
Cytoplasmic	671	679	0.46
Transmembrane Helix	680	704	0.75
Non-Cytoplasmic	705	725	0.46
Transmembrane Helix	726	751	0.86
Cytoplasmic	752	792	0.45

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDKIVEPTV AVSDNSLADE TAPDEVLKHL KHIKEQHQWD PNLPDDVAEE LDVALHTDDK  60
   61 GARVGVAHEL MEDSPYVEVR SAVPNYDEGG HTNTIRAWTI GLVFATLGSA LNMLFSMRQP 120
  121 YIVIPSYVIQ VIAYPVGVAW YKVMPNKQFK FFGIDCNLNP GPFSKKEHAL IVIMSNATFA 180
  181 GGAAYATDVL LAQRAFYKQR FSWAFELLLC ISTQTLGFGL AGFFHRFLVT PAAMIWPSTL 240
  241 INSALFNALH DRSKPDPQKV SGWTIGKYRL FLYCMIGSFV WYWFPGYIAP FLSTFAFITW 300
  301 IKPQSPIVNQ LFGGWTGLSL IPITFDWTQI SGFNFSPLIS PWHAHMNTLI GMVIFFWITT 360
  361 MGLHYSGMWY GKYLPISDSN SYDNTAQRYQ VSKILTPNYE FDQAKYEQYS PLFLSTTFAL 420
  421 NYGLSFATII AVLIHTGLFH GKELWARFRK FGEEEEDVHA RLMSRFKTVP LWWYAVLSLV 480
  481 MIGMGLGVVL GYPTHLSWWA FFVSLIIAAV WFVPIGLVQA TTNIQIGLNV ITEFIIGYMQ 540
  541 PGRPMAMMLF KTFGYITMSQ GLYFCQDMKL GHYMKLPPRV TFAGQLVACL WSSIVQICTM 600
  601 NWALGAINNV CDPEQANHYT CPNGRVFFNA SIIWGVIGPS RMFSPGQIYS GLMWFWLAGA 660
  661 ILPVVIYLGA RYWPKSPIRF LSAPVIFGGA GLIPPATPLN YLSWGIVGLV FNRHIRNRFR 720
  721 GWWMHYTYVL SAGLDVGLAL CTILIFLTLQ LTNTDFPSWW GTNIAADTMD ASGSAIQVVL 780
  781 PEGETFGPKS WS