YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159131446
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.95
Transmembrane Helix	43	63	0.86
Non-Cytoplasmic	64	73	0.71
Transmembrane Helix	74	97	0.85
Cytoplasmic	98	112	0.76
Transmembrane Helix	113	135	0.67
Non-Cytoplasmic	136	172	0.80
Transmembrane Helix	173	191	0.93
Cytoplasmic	192	201	0.73
Transmembrane Helix	202	219	0.94
Non-Cytoplasmic	220	236	0.84
Transmembrane Helix	237	258	0.92
Cytoplasmic	259	277	0.90
Transmembrane Helix	278	302	0.90
Non-Cytoplasmic	303	327	0.93
Transmembrane Helix	328	348	0.89
Cytoplasmic	349	368	0.83
Transmembrane Helix	369	387	0.94
Non-Cytoplasmic	388	395	0.81
Transmembrane Helix	396	417	0.86
Cytoplasmic	418	436	0.84
Transmembrane Helix	437	462	0.77
Non-Cytoplasmic	463	477	0.66
Transmembrane Helix	478	497	0.91
Cytoplasmic	498	557	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIRRWAEK LKVPSEPGLS NAQLMLTNED LRPVDPDRRQ WKWFNFIAFW IADSLNINTW  60
   61 MISSSMIVDG LSWWQSWICV WVGYFIAAIF ICLTGRIGAK YHVPFPVAVR SSFGIWGSFW 120
  121 PVLNRAVMAV IWYGVQSYIG GQCVTVMIEA IWPSYAHLHN SLPASAGVET KDFVSFFLFW 180
  181 LLSLPALWFP IHKIRHLFTA KAIYSPIAAI AFFAWSIARA NGIGPVVHQP ATVHGSTLAW 240
  241 AIVKAIMSCL GNFAALIMND PDFSRFARKP KDALWSQLLT IPIGFGITSF IGIIASSASA 300
  301 VIYNTDPVWN PLDLLRMFLD GASSGERFGI FVIATGFALA QLGTNISANS VSAGTDLTAL 360
  361 LPRYLNIRRG SYICAAVGLA MCPWNLVSSS NQFTTYLSAY SIFLSAIAGP MICDYYLNRK 420
  421 GYLQVKDLYS ASKGGPYYFV FGFSWHAYAS YLSGILVNIV GFAGAVGRTV PLGAQYIYNI 480
  481 NYFSGFFVSA VMYYILTRIF PLPASSDRWN EVDSDDEVSY GQEVDADDVH TPGKVRSLDK 540
  541 DSDWDRKGAK IASGAMV