YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BST1_ASPFU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.96
Transmembrane Helix	130	151	0.94
Non-Cytoplasmic	152	802	0.96
Transmembrane Helix	803	821	0.79
Cytoplasmic	822	842	0.83
Transmembrane Helix	843	865	0.84
Non-Cytoplasmic	866	901	0.89
Transmembrane Helix	902	935	0.83
Cytoplasmic	936	955	0.90
Transmembrane Helix	956	975	0.71
Non-Cytoplasmic	976	978	0.55
Transmembrane Helix	979	998	0.72
Cytoplasmic	999	1016	0.74
Transmembrane Helix	1017	1037	0.92
Non-Cytoplasmic	1038	1052	0.64
Transmembrane Helix	1053	1072	0.79
Cytoplasmic	1073	1081	0.72
Transmembrane Helix	1082	1105	0.82
Non-Cytoplasmic	1106	1110	0.51
Transmembrane Helix	1111	1128	0.90
Cytoplasmic	1129	1156	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRRSSGSPV EDDAEDSPLV SRSPTESTAH GPNNNAFETA EKSRSQIAKR GTSFDLRRDN  60
   61 GASTPRSRNS GLWRTPSSSS TSSTTAMATA STETKSSSAS FLMPLASQRL PMGTSPESSR 120
  121 FRSSRLRSPW TCSILTALTT LVASVFLFFI VRSFSARQAG EDGCGIPVMS PTFLHMVGFD 180
  181 TEHTRFASKY NLYLYREEGV DFYNQENLGL NGAPVLFLPG NAGSYRQVRS LAAEASRHFH 240
  241 DVVRHDQERI KAGTRSLDFF MIDFNEDMAA FHGQTLLDQA EYVNEAIAYI LSLYHDPKRS 300
  301 RRDPELPDPS SVILIGHSMG GIVARTALTM SNYQANSVNT IVTMSAPHAK PPVSFDSDIV 360
  361 HTYKQINDYW REAYSQTWAN NNPLWHVTLI SIAGGSRDTV VPSDYASISS LVPETHGFTV 420
  421 FTSSIPDVWI GVDHLSITWC DQFRKAIIKS LFDIIDVRRA SQTKPRAERM RIFKKWYLTG 480
  481 LEPVAERTLS QKEPNTLLTL EDKSNSILPQ GQRLILRELG HRSGPKVYLL PVPPQGVSGK 540
  541 KFTLLTDQRF DKTGEHGNLE VLFCSVFPLQ NGKFATVFSM NMDFSGGNTG STRLACKNAA 600
  601 EDGIHLPAST PASKYPFDRV QPFSYLQYEL EDLSEHQFVA IVDKADSPTK GWVLAEFSDS 660
  661 SDAVIRVRGG LGGLLSAGLK MRLPANRPML TEIKIPALHS SLLDYKLQIV RHNHDKRQEL 720
  721 FAPLLRQSIS DPHESKFFVN VDKVDVNLHG VAPFMPPPLR EQATLGGVSF QLWTDPSCGS 780
  781 TVDVSLKVDI AGSLGELVMR YRTVFAAFPL LVVALVLRKQ FQMYDETGYF ITFAEGLDTA 840
  841 LRSSFPILLL AMSLLASSLA TSAQIPPSDE PFQWPVNATE TPIDFTKNDL LLGSQDAFFW 900
  901 FLVPVFGLIS VGVCVILNYI ALILLSVLSF IYGCLRTRSG YIKRNEKGTP IFSAPTARRR 960
  961 MINTAILLVL VSTLIPYQFA YMVACIVQLA TCVRAQWHAK ETRSTAHYNF SNYAHSIFIL1020
 1021 MLWILPINIL VLLVWAHNLV VHWFMPFSSH HNVLSIMPFI LLVETMTSGA MIPRVTTRLK1080
 1081 HVTSMILFAI AVYSAVYGVS YAYLLHHLAN ILAAWFVVIY FFSSGFSLRR LWLILEGDDA1140
 1141 TQGKSEPGGS HQKKKP