YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159122556
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	166	0.99
Transmembrane Helix	167	190	0.88
Non-Cytoplasmic	191	204	0.87
Transmembrane Helix	205	224	0.92
Cytoplasmic	225	232	0.76
Transmembrane Helix	233	253	0.90
Non-Cytoplasmic	254	259	0.80
Transmembrane Helix	260	282	0.89
Cytoplasmic	283	293	0.84
Transmembrane Helix	294	315	0.94
Non-Cytoplasmic	316	322	0.87
Transmembrane Helix	323	344	0.91
Cytoplasmic	345	398	0.95
Transmembrane Helix	399	419	0.89
Non-Cytoplasmic	420	435	0.82
Transmembrane Helix	436	457	0.91
Cytoplasmic	458	476	0.94
Transmembrane Helix	477	498	0.94
Non-Cytoplasmic	499	505	0.82
Transmembrane Helix	506	527	0.92
Cytoplasmic	528	537	0.82
Transmembrane Helix	538	561	0.87
Non-Cytoplasmic	562	571	0.80
Transmembrane Helix	572	593	0.91
Cytoplasmic	594	608	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQDEDKKTE NSRSRSTSVN STDDSQHLSP TSSRESERSR SLRVLSITRT RSESRPRRGN  60
   61 LDRVYSGRHL DDQSVYHSDD DVPKAHAASL PREDDDEKQG SAVLEVRGGI LNERDTDLEE 120
  121 GTRDQSALEK SRTAKSDRSR RDPKLVTWDG PDDPENPKNW PNKKKWAAII TVSLFTFISP 180
  181 VSSSMVAPAL PSIASDFHIE DQVSSQLTLS IFVLAYAVGP LFLGPLSEIY GRVIVLQLSN 240
  241 LFYLVFNIAC GVSRTKGQMI AFRFLSGLGG SAPLAVGGGV LSDCFKPEER GKSVAIYSLA 300
  301 PLLGPAVGPI VGGFISQDTT WRWVFYATSI ADGAIQIGGL FFLRETYAPK ILKRRAERIR 360
  361 KETGDSAYQT ETERQNKTLS QTMQTALVRP FRLLSTQPIV QVLALYMAFI YGTMYLVLST 420
  421 FSSLWTRVYN ESTGIGGLNY ISLGLGFWLG SQLCAPLNDR IYRRLKARNN NIGRPEFRVP 480
  481 LLVVGAFLTP VGLFIYGWTA QFRRHWIAPN IGACLFGAGN IIAFQCIQTY MVDTYTRFAA 540
  541 SALAAVAFLR CICGFAFPLF APYMYNALHY GWGNSLLAFV SIGLGIPAPI FLWKYGEILR 600
  601 KRSPYAAG