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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|70982440, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQNIENAK GELRQQGAIE TAQEASKDPQ SKIRPEAVEK VLIEETKKAG LPAYQFNPDA  60
   61 SPEEKAAAAA VRVPPGFHHD KKPKAKAIVT DVHHILQSKR LLMTTIPQDD GTPDQYDLPP 120
  121 PRSASDLIKE EALKPEEDKK EDGEVADDLR WARDRTGWAP QFEKPQTEEE KAEGTLLDYQ 180
  181 DFLESKLDDK FFGDWYHNAG VIIFACLASW LVAVLGGGLG WIFIVMAACS TYYRTSIRRL 240
  241 RRNFRDDVNR EMAKQRLETD TESLEWINSF LVKFWPIYAP VLCDSIINSV DQVLSTSTPA 300
  301 MLDSLRLKTF ILGSKPPRLE HVKTYPKTEV DTVIMDWKFS FTPNDVMDLT ARQLKNKINP 360
  361 KVVLEVRVGK GVVSKGLDVI VEDMACSGLM RVKVKLQIPF PHIERVDVCF LERPEIDYVC 420
  421 KPLGGDTLGF DINFIPGLES FIKEQIHGNL APMMYAPNVF PIEIAKMLAG NPVDQAIGVV 480
  481 AVTLHGARQL KNPDKFAGTP DPYAVVSLNN RIELGRTKTV HDTDSPRWGE TIYVIITSFA 540
  541 ESLTIIPYDW NEYRKDKELG TATFPLDRLE EQPEHESIYL EVMASGRPRG AVHADIRFFP 600
  601 VLEGRKLENG ETEPPPELNT GIARFTVEQA KDLDSSKSMV GQLNPYGVLL LNGKEIHITK 660
  661 KLKRTNNPIF QDSSKEFLIT DRKSARLGLI IKDDRDLRTD PILGSYQIKL NDMLKMMEKG 720
  721 QNWFHLHGAK TGRAKLTLQW KPVAIGGISG SAGYIDPIGV MRFHFKSATD LRNLEKMGKS 780
  781 DPYVRVLLSG ITKGRTVTFR NNLNPEWDEV VYVPIHSARE KLTLEVMDEE SLNADRSLGS 840
  841 FEINASDYVH ENENGEYETD DEKQLISSPL RLGHREKGVL NYTVAFYPAV PVVNPEDEEE 900
  901 EEAEEMEGLD VPAVRKSIDS RRKSSHSKNP SVDSKASKST ANGQNGAATN GTTTNGDELK 960
  961 VPNRTGSFST ARDSEVMSVR SIKEVPKTYI GPEDLSKYES GFLVFKFHEA QLSRSNVQLE1020
 1021 VLMDDHMFPS YSTPKIRSKA AKLVDVGDAF VRELEFSKIT LRLVDKNDAK DDSDEHTVAK1080
 1081 LTGDTLPTLQ RILYTPTELV LRSNDGEVSK VTVSARYIPV KMKLDPSESI NNMGNLRVNV1140
 1141 LDAAELPSAD RNGFSDPYCK FRLDDKEVFK TKVQKKTLHP AWNEFFEVPI KSRIGAKFRV1200
 1201 DVYDWDFGDK ADYLGGANIN LEMLEPFHSQ EVTLTLDGKS GAIRLNLLFK SNYVMRSRQG1260
 1261 SSTFSGTFAT PGKIVGAPVK GVGFVGGNVI KGASFLKHGI MSRFKGDDSS SDEIPEEPEE1320
 1321 VSKTETTQTP SAILVDGATP PSSTPNSLQH ARTRSVVSHF GDRLGIGGSA GKGETGTATI1380
 1381 TVVSASNYPP SSNVRVIIKA LGPKGAKEVL KTKAIKASGG GPVQFDASHE TCRVHNTTAD1440
 1441 AQYQVRVVDH STFGSDSTLG EALFFVDDQG SVAGQEKQVK VGIGVVCIRS SFSQPESSLR1500
 1501 PGTAHSNNND ASSELMDSPD SKKMGRRSFL SKRSVSGA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle