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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ITA7_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIPRCDFL GLPGICYLLS FLLAGLLLPR ASAFNLDVMG AIRKEGEPGS LFGFSVALHR  60
   61 QLQPRPQSWL LVGAPQALAL PGQQANRTGG LFACPLSLEE TDCYRVDIDR GANVQKESKE 120
  121 NQWLGVSVRS QGAGGKVVTC AHRYESRQRV DQVLETRDVI GRCFVLSQDL AIRDELDGGE 180
  181 WKFCEGRPQG HEQFGFCQQG TAATFSPDSH YLIFGAPGTY NWKGLLFVTN IDSSDPDQLV 240
  241 YKTLDPADRL TGPAGDLTLN SYLGFSIDSG KGLMRSEELS FVAGAPRANH KGAVVILRKD 300
  301 SASRLIPEVV LSGERLTSGF GYSLAVTDLN SDGWADLIVG APYFFERQEE LGGAVYVYMN 360
  361 QGGHWADISP LRLCGSPDSM FGISLAVLGD LNQDGFPDIA VGAPFDGDGK VFIYHGSSLG 420
  421 VVTKPSQVLE GEAVGIKSFG YSLSGGLDVD GNHYPDLLVG SLADTAALFR ARPVLHVSQE 480
  481 IFIDPRAIDL EQPNCADGRL VCVHVKVCFS YVAVPSSYSP IVVLDYVLDG DTDRRLRGQA 540
  541 PRVTFPGRGP DDLKHQSSGT VSLKHQHDRV CGDTVFQLQE NVKDKLRAIV VTLSYGLQTP 600
  601 RLRRQAPDQG LPLVAPILNA HQPSTQRTEI HFLKQGCGDD KICQSNLQLA QAQFCSRISD 660
  661 TEFQALPMDL DGTALFALSG QPFIGLELTV TNLPSDPARP QADGDDAHEA QLLATLPASL 720
  721 RYSGVRTLDS VEKPLCLSNE NASHVECELG NPMKRGTQVT FYLILSTSGI TIETTELKVE 780
  781 LLLATISEQD LHPVSVRAHV FIELPLSISG VATPQQLFFS GKVKGESAMR SERDVGSKVK 840
  841 YEVTVSNQGQ SLNTLGSAFL NIMWPHEIAN GKWLLYPMRV ELEGGQGPEK KGICSPRPNI 900
  901 LHLDVDSRDR RRRELGQPEP QEPPEKVEPS TSWWPVSSAE KRNVTLDCAQ GTAKCVVFSC 960
  961 PLYSFDRAAV LHVWGRLWNS TFLEEYMSVK SLEVIVRANI TVKSSIKNLL LRDASTVIPV1020
 1021 MVYLDPVAVV AEGVPWWVIL LAVLAGLLVL ALLVLLLWKL GFFKRAKHPE ATVPQYHAVK1080
 1081 ILREDRQQFK EEKTGTIQRS NWGNSQWEGS DAHPILAADW HPELGPDGHP VSVTA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle