YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56972071, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRTIFLLIS VVLVAYYIYI PLPDDIEEPW KIILGNTLLK LGGDLASFGE LLGLNHFMDT  60
   61 VQLFMRFQVV PPTSDENVTV METDFNSVPV RIYIPKRKST TLRRGLFFIH GGGWCLGSAA 120
  121 YFMYDTLSRR TAHRLDAVVV STDYGLAPKY HFPKQFEDVY HSLRWFLQED ILEKYGVDPR 180
  181 RVGVSGDSAG GNLAAAVTQQ ILQDPDVKIK LKVQALIYPA LQALDMNVPS QQENSQYPLL 240
  241 TRSLLIRFWS EYFTTDRDLE KAMLLNQHVP VEFSHLLQFV NWSSLLPQRY KKGYFYKTPT 300
  301 PGSLELAQKY PGFTDVKACP LLANDSILHH LPMTYIITCQ YDVLRDDGLM YVKRLQNTGV 360
  361 HVTHHHIEDG FHGALTLPGL KITYRMQNQY LNWLHKNL

Type	Start	End	Confidence
Cytoplasmic	1	105	0.68
Transmembrane Helix	106	124	0.88
Non-Cytoplasmic	125	398	0.96