YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TAGB_DICDI
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFQFSSPSK IFLFSSVILI LIFIGIKFEL LEDTNSNRND KFNNIINRFI NYNIDDSIYK  60
   61 NKQQQQQFSN KIYSNEKKIL LKNKIIDTTI KPSININNNN NNNNKLNNNN NNNNNNNNNN 120
  121 NNNNNNNNNN NNNNYYNSIE YYSSFVSRLL KSNDDDGIYY DDYQSKYKKN HYIVQFKDRI 180
  181 NDETREQLKE FLIGTDITIL KEQPFKSHIV HYIPHDSFLV FMTKEQSVLL SSKEWISWIG 240
  241 EHEPSNKIHL NYHEKSIGYP VYIILSGSTN SLIQRWENTL NSILTSYNSK VKLTLINQKK 300
  301 LKSIVYCNDE SPSSSSSSSC SLIGSEKIVY KWISEQSESN YIERSEKLQT ANRLSPTVIF 360
  361 GTKDKLVNND RIDIPLRGKG QILSIADTGL DGSHCFFSDS KYPIPFNQVN ENHRKVVTYI 420
  421 TYHDNEDYVN GHGTHVCGSA AGTPEDSSWA ISSFSGLATD AKIAFYDLSS GSSEPTPPED 480
  481 YSQMYKPLYD AGARVHGDSW GSVSLQGYYG GYSDDAGGID AFLYEYPEFS ILRAAGNNEL 540
  541 FASLLAQATA KNAITVGAEQ TAHVNYVSDA LEYYDFSDNA NFQRPCLFDK KYCNYTTAKC 600
  601 CSEVSNVKGL QLCCPASIKQ NASDSFTTQP QFYNENNMGS FSSKGPTHDG RLKPDIVAPG 660
  661 EYITSARSNG ENSTDQCGDG SLPNANGLMS ISGTSMATPL ATAATTILRQ YLVDGYFPTG 720
  721 ESVEENKLLP TGSLLKALMI NNAQLLNGTY FWSASSTNPS NAIFEQINGA NLIQGWGALR 780
  781 MNNWLYVKSS NPTPPSRWIG IGGLGKNQKA TEWKEDSLSS GLNKSYCFTY KPSSSSSGSG 840
  841 GGGGTPRIVA TLVWTDPPSY SGAKFNLVNN LDLLLLNSDD DSIITIGNSG GSLQPAGKVA 900
  901 QPDTLNNVEG IIINPTKAMN YKFTIAGTNV PIGPQKFSFV FHGENGQFDW ADSCPQCVDG 960
  961 VQFPCLITNG IGIQSCGSDL LWTKCIVQSC NEGYNYNSLK NTCDKFLSYN YIIIIVAGGT1020
 1021 MVLIILLLMW IKYQEYKESK RDSFRRFDDG TGIFVRPKDK DAKVTPPDLY NLVSPFIIEL1080
 1081 TIATACSLVA TAASILQPFY IGNIVNNIPT TKSIGEFKSD FIIIFILAFI EFLFTNVGSW1140
 1141 ISGIVNEKMV MRLQNKVFRA LIAQDMGFFQ RNNSALLMNV LIVDTPMLRS ALTGILLSIA1200
 1201 TGVCKLVGSL VFIFTISWKL SLAFFAAVPI LGLVTQIQSQ FTKRLTRQLL FHNSKASQHG1260
 1261 TESLTNMHVV TNYCKQEKEM VKYSDQLMNV FITARKLIIT NTFAGTGKWL LIESLTFVIL1320
 1321 YFSAYLVIQK QFTVGLMISF SLYIGYVVDA SSSLFGVYVS YIQCLASATR VFMILRSAPR1380
 1381 KRTTLEEEEA DRLAGLSGGG GGGGDNGDDK KDKQNIENGK DVLPSNIITP IDNVENSNGK1440
 1441 QDDPNNNNNN IGNLDYSEQL DGVSTVADST VGLTKRELKK QKEKEQKEYF KQTGISVAET1500
 1501 PTFLPSSYTE LTECRGEIEF KNVSFRYPTR PDVQVLHNIN MKFEAGKCYG LVGPSGSGKS1560
 1561 TTLELISKFY PLHGETGGKI YMDGIDIAKI RPNNLRSFVT NVHQHPFLFD ATIGENIGYA1620
 1621 IDNPTQEDII EAAKLAYAHE FINDLPKKYD TQIGEAGNLS GGQKKRIAVA RAICAKRKIM1680
 1681 LLDEITAELD PESEEAITQS IKVLTQGHTV VMVAHKVAAV RDCDKIFVLE KGYLVEEGTH1740
 1741 DELMANKGKY YRMFSEDKDD TPLQNNNNNK NNNNNNNNNE PSSSSTPPND QPTPPPQEQQ1800
 1801 EQKNDQPPPP PPQEQQEQQE QQQQQQQEQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ1860
 1861 QNDQPPNDYD QVPPPPPLPS ESPSPPTGNN DGQPLVQMDE ENDEER

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle