YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234361, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.92
Transmembrane Helix	5	23	0.93
Cytoplasmic	24	30	0.77
Transmembrane Helix	31	51	0.91
Non-Cytoplasmic	52	64	0.78
Transmembrane Helix	65	83	0.93
Cytoplasmic	84	94	0.75
Transmembrane Helix	95	116	0.89
Non-Cytoplasmic	117	132	0.81
Transmembrane Helix	133	153	0.95
Cytoplasmic	154	171	0.92
Transmembrane Helix	172	189	0.95
Non-Cytoplasmic	190	195	0.73
Transmembrane Helix	196	213	0.96
Cytoplasmic	214	225	0.83
Transmembrane Helix	226	246	0.94
Non-Cytoplasmic	247	254	0.76
Transmembrane Helix	255	275	0.93
Cytoplasmic	276	284	0.80
Transmembrane Helix	285	305	0.92
Non-Cytoplasmic	306	324	0.86
Transmembrane Helix	325	346	0.91
Cytoplasmic	347	353	0.92
Transmembrane Helix	354	378	0.83
Non-Cytoplasmic	379	383	0.56
Transmembrane Helix	384	407	0.83
Cytoplasmic	408	420	0.93
Transmembrane Helix	421	443	0.89
Non-Cytoplasmic	444	458	0.84
Transmembrane Helix	459	483	0.88
Cytoplasmic	484	502	0.95
Transmembrane Helix	503	524	0.95
Non-Cytoplasmic	525	555	0.85
Transmembrane Helix	556	577	0.91
Cytoplasmic	578	628	0.94
Transmembrane Helix	629	647	0.55
Non-Cytoplasmic	648	648	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSLIAIAV LFPFTAGLVC LFLKNTLLRS GLVALSAIVL ICSSILLFSQ GNLPIEYSPA  60
   61 HQWDSVILVL DYALLVFFLF VGVKDILKNG WSARGVLTSG LVLSQIILLG LFEFVWAPSV 120
  121 PLASEPAFFI DQLSIIMCLI ISIIGSLILL YAIKYMKDHE HHQHLSVTRQ PRFFFFMTIL 180
  181 LGAMNGIVFS DNLLWIYFFW EITTLCCFAL IGHEQTKEAI NNAFRALWMN LIGGLGFVLA 240
  241 IIYVFTNYDS ISLQALITNP AVAMAPLFFL FMAAFTKSAQ VPFQGWLLGA MVAPVPVSAL 300
  301 LHSSTMVKAG IYLSIRLAPA ITDTSLATLI ALFGAFTFMV TAIMAISQRE SKKVLAYSTI 360
  361 SNLGLIIMCV GINTPLAITA AIVLTIFHAI SKALLFMCVG VIDHSLGSRD IENMEGLVRR 420
  421 YPLIAGITIA GILSMMLVPF GMLLGKWAAI EATSAMSGFI SPLVFLLLII GSAATTVFWV 480
  481 KWLGRFFSVT PGIEKIRFER FSFLYHAPLI VLLAFAGVFS IGVIPFYESF ILPAVTAFYP 540
  541 NAIDTSNGFF GSAAGLFTVW PLFILLAIAI ILVPVLFKPK TKNLSTAYMC GENVSTSADS 600
  601 FYSVADGETK LKLGSMYLDT QFANPHLDTG LKIAGLLILV SMLVVVLI