YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234291, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.78
Transmembrane Helix	6	28	0.91
Cytoplasmic	29	34	0.73
Transmembrane Helix	35	57	0.90
Non-Cytoplasmic	58	88	0.78
Transmembrane Helix	89	108	0.95
Cytoplasmic	109	117	0.89
Transmembrane Helix	118	137	0.92
Non-Cytoplasmic	138	144	0.75
Transmembrane Helix	145	164	0.95
Cytoplasmic	165	175	0.89
Transmembrane Helix	176	198	0.87
Non-Cytoplasmic	199	211	0.82
Transmembrane Helix	212	232	0.93
Cytoplasmic	233	252	0.85
Transmembrane Helix	253	274	0.90
Non-Cytoplasmic	275	282	0.80
Transmembrane Helix	283	304	0.95
Cytoplasmic	305	315	0.81
Transmembrane Helix	316	337	0.88
Non-Cytoplasmic	338	342	0.68
Transmembrane Helix	343	363	0.85
Cytoplasmic	364	376	0.85
Transmembrane Helix	377	397	0.87
Non-Cytoplasmic	398	412	0.86
Transmembrane Helix	413	436	0.92
Cytoplasmic	437	453	0.97
Transmembrane Helix	454	476	0.89
Non-Cytoplasmic	477	496	0.88
Transmembrane Helix	497	519	0.94
Cytoplasmic	520	633	0.96
Transmembrane Helix	634	653	0.96
Non-Cytoplasmic	654	654	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQTGLWLIM LLPLICGALI ALGYSFFCKK PALSGYLGIA GVGGSLLLSI WGLTGLLGKE  60
   61 GASHYASGFS WFSIGNSVDI SLNLNFDPLA AIMCFVILFV SLMVHIYSQG YMHGDKGYPR 120
  121 YYAFLSFFTA SMLGLVLSDN LLFTFFFWEL VGLASYLLIG FWFTRPAAAN AAKKAFIVTR 180
  181 IGDVGFLAAI LILFANTGTL DINSLNGMAE MGLIGAGTVT VAALGIFAGA VGKSAQFPLH 240
  241 VWLPDAMEGP TPVSALIHAA TMVAAGVFLV ARTYPIFESS ATAMLWVSII GAVTAIFAAT 300
  301 MALVMNDMKR ILAYSTVSQL GYMMLGLGTG GIAIGIFHLF NHAFFKSLLF LGSGSVNHAT 360
  361 GTFDIREMGG LSKPMPVTSK TFLIASLSLA GIWPLSGFFS KDEILAGAMD GQFILFILAL 420
  421 ITVFLTAFYM FRLYFVAFGG TYRGKGHPHE SPKVMSWPLL ILVVPSVISG LLNAGGSFSG 480
  481 FLGEEVHTGF FEGLFGILLH PLALVSLAVA GGGIYLAFLM YKKKSLSPAV FSERFKWLYM 540
  541 IFSKKYWMDE LYEGVISRTL LMKGLFAFAA FFDKKVVDGG LNGFFIQKVL FSRLFSRFRT 600
  601 ADERIVDGAV NGVAAITVES GKVGRKAQTG QLQSYGIYLA AGVVVLVMAA LIIW