YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57234290, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.88
Transmembrane Helix	6	26	0.89
Cytoplasmic	27	32	0.88
Transmembrane Helix	33	53	0.92
Non-Cytoplasmic	54	84	0.92
Transmembrane Helix	85	106	0.91
Cytoplasmic	107	114	0.89
Transmembrane Helix	115	133	0.94
Non-Cytoplasmic	134	138	0.56
Transmembrane Helix	139	159	0.82
Cytoplasmic	160	167	0.83
Transmembrane Helix	168	190	0.92
Non-Cytoplasmic	191	208	0.79
Transmembrane Helix	209	230	0.88
Cytoplasmic	231	242	0.74
Transmembrane Helix	243	264	0.79
Non-Cytoplasmic	265	277	0.86
Transmembrane Helix	278	298	0.91
Cytoplasmic	299	305	0.92
Transmembrane Helix	306	326	0.92
Non-Cytoplasmic	327	336	0.71
Transmembrane Helix	337	357	0.93
Cytoplasmic	358	375	0.95
Transmembrane Helix	376	398	0.92
Non-Cytoplasmic	399	416	0.86
Transmembrane Helix	417	437	0.95
Cytoplasmic	438	459	0.89
Transmembrane Helix	460	480	0.94
Non-Cytoplasmic	481	497	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPYLTLIT FLPAAGAILM ALWPRLSGRA IKISSLLLTL VPLVLSLVVF AGFDRSSSMA  60
   61 GVIQFEENLP WISLLNANYH LGVDGLSLPF LVLTTLLGVL AVLISWKVDL RIKEFFVWLL 120
  121 ILQTSITGVF VSLDLLLFFI FWELELIPMY FLISIWGAGR KEYSALKYVL YTLFGGAFIL 180
  181 AGILILFFAT GSLDIASLAS TDLNNFLRPA MMVLTFFMFF IGFAIKLPAF PFHTWLPDAH 240
  241 TDAPTAASVI LAGTLLKMGG YAMLRLNVAM FPDVCRDWAP LILTIAVINV IYGAAITLKQ 300
  301 TDIKRLIAYS SVSHMGFVLL GIFTLGEISM NGAVLQMFSH GIITGLLFAI TGVVMHNTHE 360
  361 RDINKLGGLA KQMPRTAIIF ILAGLGAMAV PATSGFIAEV SVFLGSFQSS VVPGGQVFTM 420
  421 LCLLGLVLAA AYILWTVQRV FLGPGLEKFQ MVKDADKTEI VFSLVFLVVM FGVGLYPQII 480
  481 VDVIQTGVAP LAAVFGG