YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57224737, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.59
Transmembrane Helix	4	20	0.57
Cytoplasmic	21	25	0.88
Transmembrane Helix	26	46	0.92
Non-Cytoplasmic	47	64	0.91
Transmembrane Helix	65	86	0.91
Cytoplasmic	87	95	0.79
Transmembrane Helix	96	114	0.91
Non-Cytoplasmic	115	118	0.64
Transmembrane Helix	119	137	0.92
Cytoplasmic	138	148	0.82
Transmembrane Helix	149	170	0.95
Non-Cytoplasmic	171	191	0.94
Transmembrane Helix	192	216	0.85
Cytoplasmic	217	232	0.86
Transmembrane Helix	233	254	0.89
Non-Cytoplasmic	255	266	0.83
Transmembrane Helix	267	287	0.95
Cytoplasmic	288	295	0.90
Transmembrane Helix	296	317	0.90
Non-Cytoplasmic	318	326	0.83
Transmembrane Helix	327	348	0.95
Cytoplasmic	349	368	0.90
Transmembrane Helix	369	390	0.91
Non-Cytoplasmic	391	404	0.86
Transmembrane Helix	405	427	0.91
Cytoplasmic	428	444	0.88
Transmembrane Helix	445	464	0.92
Non-Cytoplasmic	465	481	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEIIILITA ILVIITDLFL TKSKRYLAYL SLLGLAAAAV ATALNWNNPP EMAFGGMLAL  60
   61 DSYSSFFRIL FICLSGLVIM ASTDYVTKFK RFQGEYYALV LFALLGMIMM ASTANLITMY 120
  121 LSLELTGLSF YVLVGFLKDQ NSTESALKYL LLGGVASAML VFGLVIIYGF SGETNLGGIV 180
  181 NYIQTLPSGT DITTHAGLLL GIILTITGLG FKVAAVPFQF WVPDVYQGSP TPITLYLSIA 240
  241 SKAAGFALFL RLFYTVFTDP LALSQEWALI IAILAAVGMT LGNVLAIPQK NIKRMLGYSS 300
  301 IAHAGYILVA LAAVGNAPEL ADGRISLLFY LVAFAVSDLA AFISIIAISR STGSDEISSY 360
  361 EGLAKTNPVY ASALTLALLS LTGFPPLAGF LAKYYIFSAS VQADMLWLMI IAAVNTVISA 420
  421 VFYFNVIRVM WLRPARQDVR VLASWPLKLA LGISGLAVLI FGIVPETLLN LIEKAAELII 480
  481 H