YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57224525, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.90
Transmembrane Helix	8	29	0.94
Cytoplasmic	30	38	0.80
Transmembrane Helix	39	61	0.89
Non-Cytoplasmic	62	95	0.93
Transmembrane Helix	96	118	0.89
Cytoplasmic	119	125	0.82
Transmembrane Helix	126	147	0.92
Non-Cytoplasmic	148	163	0.88
Transmembrane Helix	164	184	0.91
Cytoplasmic	185	196	0.81
Transmembrane Helix	197	215	0.91
Non-Cytoplasmic	216	225	0.67
Transmembrane Helix	226	248	0.89
Cytoplasmic	249	255	0.87
Transmembrane Helix	256	275	0.94
Non-Cytoplasmic	276	280	0.74
Transmembrane Helix	281	300	0.94
Cytoplasmic	301	311	0.88
Transmembrane Helix	312	335	0.87
Non-Cytoplasmic	336	354	0.82
Transmembrane Helix	355	373	0.97
Cytoplasmic	374	408	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSGDTTWLL VSTALVMLMT PGVALFYGGM VRRKNLVSTL MMSFGAMALG GVLWVLIGYS  60
   61 LGFGNDINGL VGGLNFLGLN GVGQDPSDTY ATTVPHLAFM MFQGMFAIIS LALITGAVVE 120
  121 RIRFSALLLF GALWLCLIYS PIAHWVWGDG GWLFNLGVLD FAGGTVVHIN AGVSAMALVL 180
  181 ALGARRGFLK EQMEPNNLPM VMLGAALLWF GWFGFNGGSA LTAGGLASNA FVTTNTAAAS 240
  241 AALCWIFLSW RHRRPSLLGA VTGAVAGLVA ITPAAGFVTP LAAIAIGAVA ALVCYGAMIF 300
  301 KMKRGFDDSL DVMAVHGVGG IWGALATGIF ASVAVNSAGA DGLLSGNVEL FLKQALGVAV 360
  361 TGGFAFVGSF IIAKVVDKLV GLRVKEPEEM IGLDIAQHSE RAYGGSLR