YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57233789, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	207	0.98
Transmembrane Helix	208	231	0.86
Non-Cytoplasmic	232	250	0.89
Transmembrane Helix	251	273	0.83
Cytoplasmic	274	287	0.78
Transmembrane Helix	288	309	0.90
Non-Cytoplasmic	310	331	0.91
Transmembrane Helix	332	355	0.87
Cytoplasmic	356	365	0.92
Transmembrane Helix	366	386	0.95
Non-Cytoplasmic	387	395	0.67
Transmembrane Helix	396	415	0.93
Cytoplasmic	416	451	0.95
Transmembrane Helix	452	472	0.83
Non-Cytoplasmic	473	524	0.69
Transmembrane Helix	525	546	0.96
Cytoplasmic	547	553	0.68
Transmembrane Helix	554	575	0.91
Non-Cytoplasmic	576	576	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVLLFGNP NVGKSVVFTR LTGVQTMSAN YPGTTVTFSR GQMKLGDEIA EVIDVPGSYT  60
   61 LEPTCEAEIV ARRMLDEVAA DKEGEVIILN VVDATNLERN LYLTQQLLER GLPTVIAMNM 120
  121 WDETRHKGIK IELDRLSEIL GVPIAPTSAT SGEGIKQLVV QLLSPQIPSL AVQGQDERWQ 180
  181 RIGGIIHQVQ QITHRHHTLG ERLADASVSP VLGVFMAMLI MAAVFMVVRF VGEGLISYVF 240
  241 DPIFDNLWAP VVHSLSDALG GSGFLHGLLV GNVSGGEINF KESLGLLTSG LYVPFAMVLP 300
  301 YIVAFYLVLG ILEDTGYLPR LAVLLDNVMH HLGLHGFAFI PTLLGLGCNV PAIMATRSLE 360
  361 SRRERFIAAT LVSVAVPCVS LQAMIIGMLG GFGVEYVFLV FGTLFAVWLG LGMILNKITP 420
  421 GFSPELLLEV PPYRLPPVNL VFKKLAFRIK SFLKEALPII LGVVAVINIL NFTKVFDVIA 480
  481 KVAEPVVTGI LGLPAEAAVP LVVGFLRKDA AMALMGPLDM GPEQLVVASL VLAMLFPCIA 540
  541 SLVILFRELG KRDALKSVLV MLIAAFGVGG LMNLIL