YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57224129, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.83
Transmembrane Helix	10	30	0.93
Non-Cytoplasmic	31	40	0.77
Transmembrane Helix	41	60	0.93
Cytoplasmic	61	77	0.79
Transmembrane Helix	78	98	0.88
Non-Cytoplasmic	99	102	0.79
Transmembrane Helix	103	124	0.88
Cytoplasmic	125	133	0.82
Transmembrane Helix	134	155	0.94
Non-Cytoplasmic	156	172	0.91
Transmembrane Helix	173	195	0.89
Cytoplasmic	196	214	0.83
Transmembrane Helix	215	236	0.91
Non-Cytoplasmic	237	247	0.82
Transmembrane Helix	248	269	0.90
Cytoplasmic	270	281	0.77
Transmembrane Helix	282	302	0.85
Non-Cytoplasmic	303	307	0.53
Transmembrane Helix	308	325	0.89
Cytoplasmic	326	345	0.79
Transmembrane Helix	346	367	0.90
Non-Cytoplasmic	368	381	0.79
Transmembrane Helix	382	404	0.92
Cytoplasmic	405	426	0.85
Transmembrane Helix	427	447	0.90
Non-Cytoplasmic	448	460	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAGFSLGHG LWHLGLSLWV LLALPLPHYF MESRYLFIDR LGIFQVLIAS AVFILAALYS  60
   61 RGYVSHLIAN KELDTENLPV FYLGFNLLLS VITFAFFANN LALFWLFLEL STLFSALLIA 120
  121 TLNARDNLVA ALKYIFIAST AMIFAFIGLI ILFSLTRQVS GTGTLNWDEL AGLAPLLSPS 180
  181 VLGLSALLIL TGLLAKSGLV PLHNWLPAAY AKAPSVVTAL MSATVLNIGI VGILRLSALL 240
  241 RQSQIGETFS NVLIGLGILS IGVAAFSMLS RRNLKKLIGF SSIEHMGIML LAIGIGTPLA 300
  301 VFWMLFHTLA HSLVKSGLFF SAGIIRRQYG SDRFDRIFDI FRLQPVAAWG VIIGSAAITG 360
  361 MPLFPVFLSE LNILIQLGGI SVWLVLAVLF CLLLVASSFA TFLLKAFTRS EQTADRPVFR 420
  421 TPLSMKLPVY VIMAGVVVLG VFQPPVLADF LSQIVKGLGF