YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57223988, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	292	0.95
Transmembrane Helix	293	312	0.93
Non-Cytoplasmic	313	323	0.76
Transmembrane Helix	324	345	0.90
Cytoplasmic	346	352	0.76
Transmembrane Helix	353	374	0.93
Non-Cytoplasmic	375	402	0.85
Transmembrane Helix	403	424	0.86
Cytoplasmic	425	433	0.79
Transmembrane Helix	434	456	0.86
Non-Cytoplasmic	457	462	0.77
Transmembrane Helix	463	483	0.93
Cytoplasmic	484	520	0.94
Transmembrane Helix	521	544	0.83
Non-Cytoplasmic	545	559	0.76
Transmembrane Helix	560	584	0.80
Cytoplasmic	585	588	0.67
Transmembrane Helix	589	610	0.80
Non-Cytoplasmic	611	617	0.62
Transmembrane Helix	618	638	0.91
Cytoplasmic	639	646	0.86
Transmembrane Helix	647	669	0.89
Non-Cytoplasmic	670	676	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINSKSIVVA LAGNPNCGKT TVFNNLTGAR QHVGNWPGKT VEKKEGRFSF GGREIQVVDL  60
   61 PGAYSLGAYS EDEIIARDFV LLEKPDIVVN VLDSTNLERN LYLSVQMMEM GARVVLALNM 120
  121 YDEVSAKQIK IDTAELSKRL DIPVIPTTAC RKEGMKELVT AALNQSGSNN REPLKIDYGR 180
  181 EVEAELSALA QTIKTIPSLA DKFIPRWLAI KILEGDQNIW KVIGKYGQTG QLVAQRDASV 240
  241 KRLEDKLGED MASLIAARRY QFISQVLTGI VVKPSSQKQS FSDKLDRILT HRLLGIPVFF 300
  301 LAMFAVFQLT FALGSPLADL VDQLFGWLGG VVSTGLTAIS APDFVTSLAV DGIIGGVGSV 360
  361 IVFLPNIILL FLALSLLEDS GYMARATYVM DRFMHKLGLH GKSFMPLILG FGCNVPAIMA 420
  421 TRTLGNRNDR LITILINPLM SCTARLPVYV LFAGAFFSAN QGIIIFSLYL LGIILAIIMG 480
  481 MLFKKFLFKG ESSHFVMELP PYRIPTLRST LTNMWDRSYT FLRKMGTIIL AVVVLVWVLS 540
  541 NLPFGVEYAS QESILGRIGS FIAPVFAPAG FGFWEAGIAL LFGILAKEVV VGTLGVVYGV 600
  601 EEAGLTAAIA GSWTALSAYS FMTMTLLYIP CIAAIAAIKR ETNSWKWTSF AIGYSIILGW 660
  661 VVAVLIYQVG RLLGLG