YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHO13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	409	0.80
Transmembrane Helix	410	432	0.94
Non-Cytoplasmic	433	452	0.76
Transmembrane Helix	453	474	0.93
Cytoplasmic	475	492	0.82
Transmembrane Helix	493	517	0.88
Non-Cytoplasmic	518	533	0.76
Transmembrane Helix	534	554	0.92
Cytoplasmic	555	559	0.72
Transmembrane Helix	560	579	0.73
Non-Cytoplasmic	580	621	0.73
Transmembrane Helix	622	642	0.63
Cytoplasmic	643	656	0.72
Transmembrane Helix	657	675	0.69
Non-Cytoplasmic	676	682	0.68
Transmembrane Helix	683	704	0.91
Cytoplasmic	705	729	0.70
Transmembrane Helix	730	746	0.91
Non-Cytoplasmic	747	755	0.71
Transmembrane Helix	756	777	0.60
Cytoplasmic	778	813	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFGKEFSSQ MVPEWQQAYM DYDFLKTLLK EIITFKRRTN NAPSHGGAKT GGGLNRKLTL  60
   61 YRAFSGLVST PRHKRSNSSH DVEEGVQLTG SMRSGPILVN TTASHGYETT FLMAAEEGGE 120
  121 YELVFFRRLD DEFNKVDKFY RKKVEEVLKE AAMLNKQMDA LIAFRVKVEN PDGWRWEERT 180
  181 VEMTRLASDI ATSAAALSAS TPAGAKSMKV RSQEHMEAIQ EGGSSRAGLM EDDEEDEDEQ 240
  241 NETSVVSTGA IDNETTTSRM RGARPSPIDV LGRVKINNTK ETPRSTIKGV LKVSKQTDLK 300
  301 FSRENLMKVE ESLKRAFIEF YQKLRLLKSY SFLNVLAFSK ILKKYDKITS RDATKPYMKV 360
  361 VDSSYLGSSD EVMRLMERVE ATFIKHFANA NRAKAMNILR PKAKRERHRI TFSTGFSAGC 420
  421 VFSLIVALVA IIRTRNLLEM EGQKEYMNTM FPLYSLFGFI VLHIIVYAAN IYYWRRYRVN 480
  481 YSFIFGFKQG TELGYRQVLL VGFSIGVLAL LCVLANLDME ADPKTKAYQA RTEILPLILL 540
  541 AAMFIVLVLP FNYFYRSSRF FFLTCLFHCL AAPLYKVTLP DFFLGDQLTS QVQAIRSIEF 600
  601 YICYYGWGDF RHRKSTCKES DVYNTFFFIV AVIPYVSRLL QCLRRLFEEK NPEQGYNGLK 660
  661 YFLTIVAVCL RTAYSIQKGQ VAWRVLAAVF SFIAAIFCTY WDFVHDWGLL NRTSKNRWLR 720
  721 DKLLVPQKKV YFIAMVLNVL LRFAWIQTVL DFNFSFMHRQ TMVAIVASLE IIRRGIWNFF 780
  781 RLENEHLNNV GKYRAFKSVP LPFNYDEDDD KDN