YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	481	0.70
Transmembrane Helix	482	501	0.92
Non-Cytoplasmic	502	512	0.83
Transmembrane Helix	513	537	0.81
Cytoplasmic	538	552	0.92
Transmembrane Helix	553	574	0.93
Non-Cytoplasmic	575	597	0.96
Transmembrane Helix	598	620	0.94
Cytoplasmic	621	657	0.77
Transmembrane Helix	658	679	0.75
Non-Cytoplasmic	680	708	0.69
Transmembrane Helix	709	728	0.56
Cytoplasmic	729	732	0.31
Transmembrane Helix	733	753	0.72
Non-Cytoplasmic	754	1510	0.57
Transmembrane Helix	1511	1533	0.88
Cytoplasmic	1534	1560	0.53
Transmembrane Helix	1561	1581	0.80
Non-Cytoplasmic	1582	1591	0.53
Transmembrane Helix	1592	1613	0.73
Cytoplasmic	1614	1653	0.79
Transmembrane Helix	1654	1673	0.82
Non-Cytoplasmic	1674	1679	0.82
Transmembrane Helix	1680	1703	0.90
Cytoplasmic	1704	1755	0.93
Transmembrane Helix	1756	1775	0.84
Non-Cytoplasmic	1776	1787	0.83
Transmembrane Helix	1788	1810	0.90
Cytoplasmic	1811	1824	0.90
Transmembrane Helix	1825	1847	0.88
Non-Cytoplasmic	1848	1852	0.74
Transmembrane Helix	1853	1873	0.89
Cytoplasmic	1874	1891	0.85
Transmembrane Helix	1892	1914	0.90
Non-Cytoplasmic	1915	1950	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRREPDPP PPQRRILRTQ TVGSLGEAML DSEVVPSSLV EIAPILRVAN EVEASNPRVA  60
   61 YLCRFYAFEK AHRLDPTSSG RGVRQFKTAL LQRLERENET TLAGRQKSDA REMQSFYQHY 120
  121 YKKYIQALLN AADKADRAQL TKAYQTAAVL FEVLKAVNQT EDVEVADEIL ETHNKVEEKT 180
  181 QIYVPYNILP LDPDSQNQAI MRLPEIQAAV AALRNTRGLP WTAGHKKKLD EDILDWLQSM 240
  241 FGFQKDNVLN QREHLILLLA NVHIRQFPKP DQQPKLDDRA LTIVMKKLFR NYKKWCKYLG 300
  301 RKSSLWLPTI QQEVQQRKLL YMGLYLLIWG EAANLRFMPE CLCYIYHHMA FELYGMLAGS 360
  361 VSPMTGEHVK PAYGGEDEAF LQKVVTPIYQ TISKEAKRSR GGKSKHSVWR NYDDLNEYFW 420
  421 SIRCFRLGWP MRADADFFCQ TAEELRLERS EIKSNSGDRW MGKVNFVEIR SFWHIFRSFD 480
  481 RLWSFYILCL QAMIVIAWNG SGELSAIFQG DVFLKVLSVF ITAAILKLAQ AVLDIALSWK 540
  541 ARHSMSLYVK LRYVMKVGAA AVWVVVMAVT YAYSWKNASG FSQTIKNWFG GHSHNSPSLF 600
  601 IVAILIYLSP NMLSALLFLF PFIRRYLERS DYKIMMLMMW WSQPRLYIGR GMHESALSLF 660
  661 KYTMFWIVLL ISKLAFSYYA EIKPLVGPTK DIMRIHISVY SWHEFFPHAK NNLGVVIALW 720
  721 SPVILVYFMD TQIWYAIVST LVGGLNGAFR RLGEIRTLGM LRSRFQSIPG AFNDCLVPQD 780
  781 NSDDTKKKRF RATFSRKFDQ LPSSKDKEAA RFAQMWNKII SSFREEDLIS DREMELLLVP 840
  841 YWSDPDLDLI RWPPFLLASK IPIALDMAKD SNGKDRELKK RLAVDSYMTC AVRECYASFK 900
  901 NLINYLVVGE REGQVINDIF SKIDEHIEKE TLITELNLSA LPDLYGQFVR LIEYLLENRE 960
  961 EDKDQIVIVL LNMLELVTRD IMEEEVPSLL ETAHNGSYVK YDVMTPLHQQ RKYFSQLRFP1020
 1021 VYSQTEAWKE KIKRLHLLLT VKESAMDVPS NLEARRRLTF FSNSLFMDMP PAPKIRNMLS1080
 1081 FSVLTPYFSE DVLFSIFGLE QQNEDGVSIL FYLQKIFPDE WTNFLERVKC GNEEELRARE1140
 1141 DLEEELRLWA SYRGQTLTKT VRGMMYYRKA LELQAFLDMA KDEELLKGYK ALELTSEEAS1200
 1201 KSGGSLWAQC QALADMKFTF VVSCQQYSIH KRSGDQRAKD ILRLMTTYPS IRVAYIDEVE1260
 1261 QTHKESYKGT EEKIYYSALV KAAPQTKPMD SSESVQTLDQ LIYRIKLPGP AILGEGKPEN1320
 1321 QNHAIIFTRG EGLQTIDMNQ DNYMEEAFKM RNLLQEFLEK HGGVRCPTIL GLREHIFTGS1380
 1381 VSSLAWFMSN QENSFVTIGQ RVLASPLKVR FHYGHPDIFD RLFHLTRGGI CKASKVINLS1440
 1441 EDIFAGFNST LREGNVTHHE YIQVGKGRDV GLNQISMFEA KIANGNGEQT LSRDLYRLGH1500
 1501 RFDFFRMLSC YFTTIGFYFS TMLTVLTVYV FLYGRLYLVL SGLEEGLSSQ RAFRNNKPLE1560
 1561 AALASQSFVQ IGFLMALPMM MEIGLERGFH NALIEFVLMQ LQLASVFFTF QLGTKTHYYG1620
 1621 RTLFHGGAEY RGTGRGFVVF HAKFAENYRF YSRSHFVKGI ELMILLLVYQ IFGQSYRGVV1680
 1681 TYILITVSIW FMVVTWLFAP FLFNPSGFEW QKIVDDWTDW NKWIYNRGGI GVPPEKSWES1740
 1741 WWEKELEHLR HSGVRGITLE IFLALRFFIF QYGLVYHLST FKGKNQSFWV YGASWFVILF1800
 1801 ILLIVKGLGV GRRRFSTNFQ LLFRIIKGLV FLTFVAILIT FLALPLITIK DLFICMLAFM1860
 1861 PTGWGMLLIA QACKPLIQQL GIWSSVRTLA RGYEIVMGLL LFTPVAFLAW FPFVSEFQTR1920
 1921 MLFNQAFSRG LQISRILGGQ RKDRSSKNKE