YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.98
Transmembrane Helix	45	66	0.90
Non-Cytoplasmic	67	73	0.85
Transmembrane Helix	74	94	0.94
Cytoplasmic	95	112	0.91
Transmembrane Helix	113	133	0.92
Non-Cytoplasmic	134	140	0.69
Transmembrane Helix	141	163	0.86
Cytoplasmic	164	168	0.84
Transmembrane Helix	169	189	0.90
Non-Cytoplasmic	190	203	0.82
Transmembrane Helix	204	225	0.94
Cytoplasmic	226	243	0.81
Transmembrane Helix	244	264	0.87
Non-Cytoplasmic	265	282	0.80
Transmembrane Helix	283	305	0.83
Cytoplasmic	306	310	0.72
Transmembrane Helix	311	332	0.91
Non-Cytoplasmic	333	340	0.61
Transmembrane Helix	341	360	0.93
Cytoplasmic	361	390	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSQEHYAN GDQNLEANLI DHEVVTESSS SAVPQTENYK RWLRVSIYVI FVLFCQPLAT  60
   61 ILGRLYYENG GNSTYVVTLL QLIGFPVLVL FRFFSRIRQP KSTDTNFSQS PSFTTLASVY 120
  121 LCTGLLVSAY AYLSAVGLLY LPVSTFSLIL ASQLAFTAFF SYFLNSQKFT PLIVSSLLLL 180
  181 TVSSALLVVN TDSENSTNVS RVQYVIGFIC TIGASAGIGL LLSLIQMLFR KVFTKHTSSA 240
  241 VTDLAIYQSL VASCVVLIGL FASGEWETLP SEMRNYKLGK VSYVLTLASA AISWQVYTLG 300
  301 LVGLIFESSS VFSNSITAVG LPIVPVAAVI VFHDRMDASK IFSIILAICG FLSFVYQHYL 360
  361 DEKKLNTSHT SAVGDLHLPV EEGHTNIQSV