YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.98
Transmembrane Helix	48	69	0.91
Non-Cytoplasmic	70	76	0.87
Transmembrane Helix	77	97	0.94
Cytoplasmic	98	112	0.92
Transmembrane Helix	113	135	0.86
Non-Cytoplasmic	136	141	0.78
Transmembrane Helix	142	166	0.85
Cytoplasmic	167	173	0.80
Transmembrane Helix	174	192	0.94
Non-Cytoplasmic	193	206	0.85
Transmembrane Helix	207	231	0.89
Cytoplasmic	232	246	0.86
Transmembrane Helix	247	266	0.93
Non-Cytoplasmic	267	285	0.85
Transmembrane Helix	286	308	0.88
Cytoplasmic	309	313	0.80
Transmembrane Helix	314	335	0.91
Non-Cytoplasmic	336	343	0.70
Transmembrane Helix	344	363	0.94
Cytoplasmic	364	394	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITQVIYVN DHNNIEANLT GQEEMNTTME IESSSVPQSK NYKKWLRISI YVFFVLACQA  60
   61 LSTILGRVYY ENGGKSTWMG TLVQLIGFPV LFLFRFFSQT KNPKPTEADF RKFSSFTILG 120
  121 SVYIVTGLLV SANSYMSSVG LLYLPVSTFS LILASQLAFT AFFSYFLNSQ KFTPFIVNSL 180
  181 FLLTISSALL VVNTDSENTA KVSRVKYVIG IICTIGASAG IGLLLSLVQL ILRKVLKKQT 240
  241 FSTVTDLVAY QSLVASCVVL IGLFASGEWK TLTSEMENYK LGKVPYVMTL ASIAISWQVY 300
  301 TIGVVGLIFE SSSVFSNSIT AVGLPIVPVV AVIVFHDKMN ASKIFSIILA IWGFISFVYQ 360
  361 HYLDEKKLKT SHTSPVGDPH LLPAEEGHTN IHSV