YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78771795
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRRKSKGN RVLIEIETTV VYRETQRMVI YMPKHRKRGY CFSVALSCTS LNSSILFFIF  60
   61 LLLWVNHNKV IHTQVINWMP LKFKILIFDN IFLNKENADG LRGQSFSLVI AGPKKSRATL 120
  121 EVQIVDVNDN SPQFSNTPSS FEISENAEIG TDIFKVTTLD PDTGISGISR FSVEGDSSFT 180
  181 LAKRKCSSGK CSTQLRLAKK LDFEEKPIHT FNITAKDGDP HSNRTHTVAH TVTIHVKNEN 240
  241 DEPPKFLTDF SQVFPIFKST KPGDIIAKLE AIDVENGAEI QFGMKENEHL KIDSKSGNVL 300
  301 LKKLPTDDAL ITVELYATSS KNGKSKTVEM KLRLMNDEAT LPKIAENQEK PELCEFPIYE 360
  361 AHLIQGTGTF STPLKIKTLK SMAEEKPRLI GGSESFDLNV IDDFHVELKV LNAEKVASQV 420
  421 LDSAQLL

Type	Start	End	Confidence
Cytoplasmic	1	39	0.97
Transmembrane Helix	40	64	0.90
Non-Cytoplasmic	65	427	0.98