YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78045234, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.77
Transmembrane Helix	20	39	0.88
Non-Cytoplasmic	40	43	0.53
Transmembrane Helix	44	61	0.46
Cytoplasmic	62	63	0.38
Transmembrane Helix	64	87	0.78
Non-Cytoplasmic	88	92	0.39
Transmembrane Helix	93	114	0.90
Cytoplasmic	115	123	0.39
Transmembrane Helix	124	147	0.82
Non-Cytoplasmic	148	159	0.44
Transmembrane Helix	160	182	0.83
Cytoplasmic	183	183	0.36
Transmembrane Helix	184	209	0.74
Non-Cytoplasmic	210	224	0.57
Transmembrane Helix	225	250	0.77
Cytoplasmic	251	264	0.57
Transmembrane Helix	265	284	0.46
Non-Cytoplasmic	285	304	0.57
Transmembrane Helix	305	327	0.89
Cytoplasmic	328	334	0.56
Transmembrane Helix	335	356	0.92
Non-Cytoplasmic	357	365	0.56
Transmembrane Helix	366	387	0.89
Cytoplasmic	388	393	0.55
Transmembrane Helix	394	416	0.89
Non-Cytoplasmic	417	433	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRIIQVEE KLPLLETLPL SFQHLMAMFG ATVLVPLLFK IDPAIALLMN GIGTLLYTYI  60
   61 TRGGIPAYLG SSFAFIAPTL LIMSKWGYPV AQSGFIFFGL FFIVVSGIIY IAGTKWIDIV 120
  121 LPPPVMGAVV AVIGLELAPV AAQMAGIAPS GQNWTMNPKV VMVSMFTLLV AIIGSVVFRG 180
  181 FLQIIPVLIA IIAGYFFAWT QGMVDFSLVA KAPWFKIPTF STPQFNLNAI IVMAPAALVV 240
  241 LAEHIGHLIV TGNIVERDLV KKPGLHLSLF ADGVTNVISG FTGSPPNTTY GENIGVMAIT 300
  301 RVYSVWVIRG AAVLAIILSL IGKLAAAIQT IPRPVMGGIS LLLFGVIAVS GIRMLIEQMV 360
  361 DYGKNVNLVL SAVVFIVGVS GAKVTLGTVE IKGMALAAVV GVILSLIIHG LNYLGLLNEN 420
  421 LTVSENLVRK NES