YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78045222, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.71
Transmembrane Helix	27	48	0.84
Non-Cytoplasmic	49	60	0.67
Transmembrane Helix	61	82	0.91
Cytoplasmic	83	87	0.58
Transmembrane Helix	88	106	0.75
Non-Cytoplasmic	107	112	0.72
Transmembrane Helix	113	133	0.92
Cytoplasmic	134	139	0.62
Transmembrane Helix	140	161	0.78
Non-Cytoplasmic	162	163	0.51
Transmembrane Helix	164	184	0.80
Cytoplasmic	185	190	0.63
Transmembrane Helix	191	210	0.93
Non-Cytoplasmic	211	233	0.64
Transmembrane Helix	234	257	0.79
Cytoplasmic	258	268	0.58
Transmembrane Helix	269	291	0.85
Non-Cytoplasmic	292	310	0.65
Transmembrane Helix	311	332	0.90
Cytoplasmic	333	341	0.65
Transmembrane Helix	342	363	0.87
Non-Cytoplasmic	364	371	0.56
Transmembrane Helix	372	403	0.75
Cytoplasmic	404	417	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISNNLMEK GYNIGESFKE LVKNLSFPGL TTGLIGALFS SMGPGLIVMS AAKQGNLPDD  60
   61 IAVSWIFAIF FFAGLATMFV SLYYRVPLVI AYSIPGSVLI GKYLASGGNI HEAVGVYFSI 120
  121 AVLVIILTAT GAIKAVIEHI PIPIMLGMVG GVLLSFGLNA FTSALTTPAV YGIMVIIYFI 180
  181 WYYFKGLSSK IPGVVVSLIV GVLLLKYFGL TKNVPIQWEV AKPVIVSPSF SLKGLLTLGV 240
  241 PLFFMVVGVQ NIQAVGVLLS RGYKPPINAM YFIPSIATFF NGLFAGHTAV TAGPSTAICS 300
  301 SDIAGPKEYR WIASFFEGVF WVLVGLLAKV GVESAKLAPK EFMQVIAGLA MFEVFISVFE 360
  361 GAFSQKFRKG AMVAFFVAAS GISLFNIGAP FWAIVFGVIA SLIAENGDFK KINNEQQ