YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78045189, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.88
Transmembrane Helix	7	25	0.97
Cytoplasmic	26	43	0.87
Transmembrane Helix	44	64	0.93
Non-Cytoplasmic	65	72	0.78
Transmembrane Helix	73	94	0.91
Cytoplasmic	95	121	0.95
Transmembrane Helix	122	144	0.85
Non-Cytoplasmic	145	155	0.72
Transmembrane Helix	156	176	0.91
Cytoplasmic	177	185	0.63
Transmembrane Helix	186	206	0.86
Non-Cytoplasmic	207	229	0.89
Transmembrane Helix	230	252	0.87
Cytoplasmic	253	270	0.87
Transmembrane Helix	271	291	0.92
Non-Cytoplasmic	292	326	0.92
Transmembrane Helix	327	352	0.85
Cytoplasmic	353	372	0.88
Transmembrane Helix	373	393	0.94
Non-Cytoplasmic	394	400	0.64
Transmembrane Helix	401	421	0.92
Cytoplasmic	422	427	0.81
Transmembrane Helix	428	449	0.91
Non-Cytoplasmic	450	457	0.80
Transmembrane Helix	458	480	0.91
Cytoplasmic	481	492	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRMVKFWFL GIFVFIMLVS GFFGFKKTKT VDDFILGGRK VGPWLSAFAY GTTYFSAVLF  60
   61 IGYAGKVGFS FGLPALWIAF GNAVIGSFLA WKILAKPTRY MTQQLNARTM PEFLAKRYDF 120
  121 PLYKPLAALI IFIFLVPYSA SVYMGLSYLF EAVFGLSYLF ALLLMAGLTA IYLLLGGYFA 180
  181 VALTDFIQGT IMLLGVFLMV GYLVNTPEVG GISSIAFKLS QINPDFTSLW GGQGFSSLMF 240
  241 LMLLTSFGSW GLPQMVQKFY AIRDEKAITP ATWVSTLFAL VIAGGAYFTG ALTPLFFKSL 300
  301 PVDPATGKPT PDLLVPQLIA QHLPEWVAAL ILLLVLSASM STLSSLVLVS SSAVAVDLLG 360
  361 DTGLLKDKSG RQILVLRILT IVFIAFSVVI ALLKPAIILS LMAISWGAVA GSFLAPYFCG 420
  421 LFFRRVNAVG ALAGTFTGLL TVVTLAVKHG FDAKVLPVAG VYGIFLPFVV VPLVSLLVPL 480
  481 KESKTVKLLF EE