YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77997121, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNKFIDKL ATTLLTLAGL TILGILISFI FYILKRGLPV LTPSFIFGPP SEMEAGGGVG  60
   61 PELFNTFYIL VLSLAFSLPV GLGAGIWLAE YAKPGRVVNI IRTSTEMLAT VPSIVFGLFG 120
  121 MIIFVNFLGL GFTIIGGALT LSLLNLPVLI RVTEEAVRAV PKSYRMASLA LGATKSQTLF 180
  181 RVVLPAALPR IITGVTLVAG RAIGESAILI FTAGTTVSRF MFDLNPFASG ETLAVHLWYV 240
  241 NSEGLIPDAT RIADGSAALL LILVLIFNLL LVIPTKRYEK KVKLN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	34	0.93
Non-Cytoplasmic	35	65	0.97
Transmembrane Helix	66	89	0.92
Cytoplasmic	90	106	0.82
Transmembrane Helix	107	125	0.90
Non-Cytoplasmic	126	129	0.56
Transmembrane Helix	130	150	0.81
Cytoplasmic	151	190	0.74
Transmembrane Helix	191	217	0.67
Non-Cytoplasmic	218	251	0.80
Transmembrane Helix	252	273	0.90
Cytoplasmic	274	285	0.90