YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77997116, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	41	0.86
Non-Cytoplasmic	42	54	0.64
Transmembrane Helix	55	74	0.75
Cytoplasmic	75	76	0.41
Transmembrane Helix	77	97	0.76
Non-Cytoplasmic	98	104	0.57
Transmembrane Helix	105	125	0.91
Cytoplasmic	126	136	0.63
Transmembrane Helix	137	159	0.86
Non-Cytoplasmic	160	172	0.71
Transmembrane Helix	173	193	0.80
Cytoplasmic	194	199	0.62
Transmembrane Helix	200	223	0.85
Non-Cytoplasmic	224	243	0.70
Transmembrane Helix	244	268	0.72
Cytoplasmic	269	292	0.68
Transmembrane Helix	293	315	0.63
Non-Cytoplasmic	316	326	0.39
Transmembrane Helix	327	348	0.86
Cytoplasmic	349	349	0.28
Transmembrane Helix	350	374	0.71
Non-Cytoplasmic	375	384	0.53
Transmembrane Helix	385	412	0.77
Cytoplasmic	413	421	0.50
Transmembrane Helix	422	441	0.90
Non-Cytoplasmic	442	442	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNQGVLER IFKLSQKGTN VKTEILAGVT TFVTLAYIIF VNPNILADAG IPKEAAIAAT  60
   61 IWATAVATTL MGLWANFPVA VAPGMGLNAF FAYFVVAQLK LPWQVGLGAV FFSGIFFLIL 120
  121 TIGGIRQAIV NAVPNNLKAA IGVGIGLFIA FIGLKNAGIV VADQATFVTL GHLTKPEPLL 180
  181 AIVGLILTAV LLSRNVKGAM LIGIITTTIL GMIFGVVPVP KGISGIMSFN MPSLKPTFLH 240
  241 LDIAGAWKFG IFNIIFTMTM VELFDNMGTL IGLTRKAGLM DENGKIENLD RALTTDAIGT 300
  301 IISAILGTTT VTSYIESAAG IAEGGKTGLT AIVVAILFVV ALIFAPLIGL VPAFATAPAL 360
  361 ILVGALMLAE IRHVEFDDFT EAFPAFMTII MMPLTYSIAN GFAFGFVSYT LVKALTGKFK 420
  421 DISWVMWIVS IAFVINFYMR LH