YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044978, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.92
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	33	0.97
Transmembrane Helix	34	54	0.95
Cytoplasmic	55	61	0.82
Transmembrane Helix	62	82	0.92
Non-Cytoplasmic	83	116	0.89
Transmembrane Helix	117	137	0.91
Cytoplasmic	138	144	0.79
Transmembrane Helix	145	164	0.93
Non-Cytoplasmic	165	180	0.85
Transmembrane Helix	181	203	0.90
Cytoplasmic	204	212	0.95
Transmembrane Helix	213	235	0.84
Non-Cytoplasmic	236	245	0.76
Transmembrane Helix	246	267	0.93
Cytoplasmic	268	275	0.89
Transmembrane Helix	276	298	0.91
Non-Cytoplasmic	299	304	0.76
Transmembrane Helix	305	324	0.94
Cytoplasmic	325	333	0.87
Transmembrane Helix	334	356	0.90
Non-Cytoplasmic	357	376	0.90
Transmembrane Helix	377	398	0.92
Cytoplasmic	399	438	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKFLSLLF GLILLPNLSL AGEPGYNPGD VTFVLLSAAL VFLMTPGLAL FYGGMVRRKN  60
   61 VLNTVAMSFI AIVVVSLQWI LIGYTLSFGN DVKGIIGDFS YLGLKNVMGL TVSNLPGYVF 120
  121 VVFQLMFAII TAAIISGSVV ERMSFAAWIL FIALWTTLVY DPLAHMVWGG GMLFKLPTLD 180
  181 FAGGTVVHIS SGISGLVAAL ILGKRKEGEN APLMPHNLPL TILGAGLLWF GWFGFNAGSA 240
  241 LAANNLAALA FINTNTSAVM AALAWALAEW LHRRKVTVLG IATGAVAGLV AVTPAAGFVT 300
  301 PTSSVFIGLV GGVLVYIAVG ILKAKFNYDD SLDAFGCHGV GGIWGAVATG IFATKAVNPA 360
  361 GADGVLYGNF GQLLNQLAGV GLAIALAVVG TVIILKLIGI FLPLRVKDEA ESIGLDITVH 420
  421 GEDAYKDLIF TGKSVPFS