YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044073, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.94
Transmembrane Helix	7	32	0.83
Non-Cytoplasmic	33	50	0.81
Transmembrane Helix	51	71	0.89
Cytoplasmic	72	83	0.80
Transmembrane Helix	84	105	0.92
Non-Cytoplasmic	106	114	0.75
Transmembrane Helix	115	133	0.97
Cytoplasmic	134	144	0.79
Transmembrane Helix	145	165	0.96
Non-Cytoplasmic	166	170	0.83
Transmembrane Helix	171	192	0.91
Cytoplasmic	193	205	0.86
Transmembrane Helix	206	234	0.80
Non-Cytoplasmic	235	270	0.51
Transmembrane Helix	271	294	0.86
Cytoplasmic	295	313	0.85
Transmembrane Helix	314	335	0.94
Non-Cytoplasmic	336	344	0.77
Transmembrane Helix	345	367	0.92
Cytoplasmic	368	386	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENTWLVAAL WIGLALVSGL IAGWTGISIS LVEIAVGVVA GNFLGLHPNQ WVNFLAGVGS  60
   61 IVLTFLAGAE VDPVVLRTKF RESVSIGFLS FLLPFIGAFL YAYYVLHWTL EASEIAGIAL 120
  121 STTSVAVVYA VMVETGLNET EIGKIILAAC FITDLGTVVA LGVLFANFNS WMFLFIVATS 180
  181 LILAFVSRFT PFFLNRYGNR VSQLEIKYIF FLLFFLGGLA TMANSEAVLP AYLLGLAVAG 240
  241 FFLQEKTLTA RLRIITFSLL TPFYFLKAGL YVSLPAVVTG AGIITVGLIV KILAKFLGVW 300
  301 PTTRFFKFGP REGMYTTLLM STGLTFGTIS ALFGLNHGYI NQVQYTILVT VVILSAVVPT 360
  361 IIAQAFFRPD REAVTREEKL EAKLVP