YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043942, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.86
Transmembrane Helix	9	30	0.88
Cytoplasmic	31	37	0.79
Transmembrane Helix	38	60	0.87
Non-Cytoplasmic	61	72	0.73
Transmembrane Helix	73	91	0.93
Cytoplasmic	92	106	0.83
Transmembrane Helix	107	125	0.92
Non-Cytoplasmic	126	143	0.76
Transmembrane Helix	144	165	0.86
Cytoplasmic	166	188	0.86
Transmembrane Helix	189	208	0.92
Non-Cytoplasmic	209	235	0.89
Transmembrane Helix	236	257	0.88
Cytoplasmic	258	263	0.75
Transmembrane Helix	264	282	0.93
Non-Cytoplasmic	283	289	0.80
Transmembrane Helix	290	309	0.95
Cytoplasmic	310	316	0.82
Transmembrane Helix	317	335	0.92
Non-Cytoplasmic	336	341	0.77
Transmembrane Helix	342	358	0.91
Cytoplasmic	359	368	0.84
Transmembrane Helix	369	392	0.89
Non-Cytoplasmic	393	407	0.86
Transmembrane Helix	408	432	0.82
Cytoplasmic	433	459	0.82
Transmembrane Helix	460	479	0.86
Non-Cytoplasmic	480	488	0.64
Transmembrane Helix	489	510	0.88
Cytoplasmic	511	522	0.79
Transmembrane Helix	523	543	0.88
Non-Cytoplasmic	544	551	0.61
Transmembrane Helix	552	570	0.92
Cytoplasmic	571	580	0.89
Transmembrane Helix	581	602	0.88
Non-Cytoplasmic	603	621	0.82
Transmembrane Helix	622	642	0.95
Cytoplasmic	643	662	0.89
Transmembrane Helix	663	682	0.94
Non-Cytoplasmic	683	710	0.91
Transmembrane Helix	711	732	0.94
Cytoplasmic	733	738	0.91
Transmembrane Helix	739	760	0.91
Non-Cytoplasmic	761	767	0.73
Transmembrane Helix	768	787	0.94
Cytoplasmic	788	796	0.84
Transmembrane Helix	797	814	0.95
Non-Cytoplasmic	815	819	0.83
Transmembrane Helix	820	837	0.90
Cytoplasmic	838	851	0.80
Transmembrane Helix	852	873	0.91
Non-Cytoplasmic	874	884	0.79
Transmembrane Helix	885	906	0.88
Cytoplasmic	907	941	0.78
Transmembrane Helix	942	961	0.78
Non-Cytoplasmic	962	970	0.75
Transmembrane Helix	971	990	0.97
Cytoplasmic	991	1005	0.74
Transmembrane Helix	1006	1026	0.90
Non-Cytoplasmic	1027	1032	0.70
Transmembrane Helix	1033	1052	0.88
Cytoplasmic	1053	1063	0.82
Transmembrane Helix	1064	1084	0.90
Non-Cytoplasmic	1085	1101	0.85
Transmembrane Helix	1102	1124	0.92
Cytoplasmic	1125	1149	0.83
Transmembrane Helix	1150	1173	0.85
Non-Cytoplasmic	1174	1196	0.89
Transmembrane Helix	1197	1219	0.93
Cytoplasmic	1220	1274	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLGFLINGL SLQALFGVML LLVGELVALL RWKNLIQFLI ISSIAEIGFV LLGLGTGTYV  60
   61 GTSGALLHLE YQIVMRGLVF LAAAAFIFRG HSASVEKLQG IGRKMPVTTT LFGFGLFSVM 120
  121 GLSPFKGSIS KFLIIYAAIE SGHWLSAAIA TFGSIIEAVY FLQVFQILCF EDPVQEGPGA 180
  181 EEVRETSPGL MAVLLVLGVL TALMGLIPEP FIHGAERAAA VLLGGTGPDQ LPVFESPWSS 240
  241 LVLVPYVGGF IVYLAGCFSQ ALRNILAVGI TGTTVYLTWL AGNFDSLSKF FALLMAFIGF 300
  301 LVTLYSVGYF KAKPYANRYF FFLLLMLGTL LGLTTSKELG NFYVFWELMT WTSYFLVIQE 360
  361 QTQKALRAGF KYFIMCTSGA YIMLLAILTL HVKLGSLDLT TISANLQVLS PGLMLVVLGM 420
  421 FIIGFGVKAG LVPLHSWLPD AHPVAPSSIS APMSGILTKT GIYGLVRILF VVFGVSLLTK 480
  481 VGTTGQFSTI GFIISLLGAF TLLYGEIMAL LQTDVKKMLA YSTMAQVGEI VITLGVGTYL 540
  541 SFIGALYHIL NHAIMKNLLF LAVGALILRV KSQEINKLKG IGRVMPVTSL CFSIGILAIM 600
  601 GLPPFNGFIS KFLMLYALVQ SGHLALAGLI LLGSILGGFY YLKVVRIIFF EKYEGPARQE 660
  661 APITMLIPIV ILTGLSIFNG VYPQAGLALI KPVADLIAAN GHMAVTAIPK ITISWPIVTL 720
  721 IPMVGALFAY FFGRRSVKVS GWLAVATMVA TLATVFAAST GLDIFSRSFA FLIAFIGVLN 780
  781 LLYSLGYMEH EHAQNRFYLF FTLMIGGLLG VAVSKDLFNF FAFWEIMSSW TLYFVIIHEE 840
  841 TSEALREGFK YFIFNYVGAN LLLLGLLVLT VNAGTFEMSE LAGRLSALPT GLVALGLILM 900
  901 LIGFAMKAAM LPFRIDYQMH PPTAPTPVSG YISSVLLKSA PFGMVKLFYV FGGVALLSKL 960
  961 GQLGDMPSLM YILAWVSGLT ILMAAALALL QSGMKRLLIY HTVSQMGYII LGISLGSSLG1020
 1021 LAGGLLHLVN HMLFKNLLFL VAGAIMVKTG IGDLDRLGGI GRKMPVTLSV FAIGTFSIAG1080
 1081 IPPFNGFTSK WLIYEASMEK GYVFLALLSL LASVLTLASF LKFLHSAFFG QIPKELENVT1140
 1141 EAPWTMQIPM VILAVLCMVF GIFPGIPLAT IAAIERSLGL TPVSVTLFGI DSGLGTWNAG1200
 1201 IIAVFMVIAF IVGLSIYFVG NGKIRYTKIY TCGVTTLTPE EVHVNSHNLY ESPKGLIKGW1260
 1261 IKFLHRVAGL GKGV