YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043922, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQYRYKAKD LSGRVVSGLV EAESEVGARN LLREKRFFVL ELKKSDGAVN SGFSFSFQRK  60
   61 LKAKDLALMA KQLGTMIAAG VPLLTAVNVL SRQVENKTLK KSLIRIEEKL RNGNTLSESL 120
  121 REEKIFPELM CSMVEVGEVG GVLDNVLDRL SLHYEKEAQL SEKIRSAMTY PMVVLFAAIA 180
  181 AVLVLVTYVL PQFTGILLQA NIELPLITQV VIKITNFFSQ HAATIFLTLG AIIGGLLYWF 240
  241 STPPGRKIRD QLSLNMPLIG TLVLKGIIAR FSRTMATLVQ GGVPMLQSLR VVQKTLGNGE 300
  301 MQKVLELAED KVREGESLAT FLAQSRWFPP LLTQMMLVGE ETGQLDAMLT KAADFYEAEV 360
  361 DAAVGRLSSI IEPVLILFMG GIVGLIIVSI MLPMFNMVNA VK

Type	Start	End	Confidence
Cytoplasmic	1	168	0.92
Transmembrane Helix	169	190	0.91
Non-Cytoplasmic	191	220	0.87
Transmembrane Helix	221	240	0.96
Cytoplasmic	241	373	0.65
Transmembrane Helix	374	395	0.93
Non-Cytoplasmic	396	402	0.57