YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043767, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSPVDLKAF LLGLKKTTPF MLGLIPFGLA YGIMATQAKL SLGETLLMSL LVFAGSAQFM  60
   61 AVGMIKEGVG IGFIVLSTLL INLRHLLMGL SLAPFLNKLN AKWLYLLAFG LTDEVYGTTI 120
  121 GHYQQEGSYK GNPYFMLGSE AGIYFSWLIS SLAGALLGTL IKDPLSWGLD FAMPATFLSI 180
  181 VIGQIKSWQI LIVFLIAGIL AIAGYLLIPG KWYIILATGT ATVLGTILEL LTEKRSTAP

Type	Start	End	Confidence
Cytoplasmic	1	16	0.81
Transmembrane Helix	17	38	0.83
Non-Cytoplasmic	39	44	0.57
Transmembrane Helix	45	65	0.67
Cytoplasmic	66	68	0.46
Transmembrane Helix	69	93	0.73
Non-Cytoplasmic	94	140	0.62
Transmembrane Helix	141	161	0.90
Cytoplasmic	162	186	0.68
Transmembrane Helix	187	207	0.89
Non-Cytoplasmic	208	211	0.72
Transmembrane Helix	212	232	0.85
Cytoplasmic	233	239	0.89