YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043387, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.85
Transmembrane Helix	8	38	0.84
Non-Cytoplasmic	39	54	0.77
Transmembrane Helix	55	78	0.82
Cytoplasmic	79	88	0.82
Transmembrane Helix	89	111	0.91
Non-Cytoplasmic	112	116	0.74
Transmembrane Helix	117	135	0.89
Cytoplasmic	136	142	0.83
Transmembrane Helix	143	166	0.91
Non-Cytoplasmic	167	173	0.90
Transmembrane Helix	174	197	0.90
Cytoplasmic	198	216	0.94
Transmembrane Helix	217	238	0.90
Non-Cytoplasmic	239	243	0.74
Transmembrane Helix	244	261	0.92
Cytoplasmic	262	278	0.75
Transmembrane Helix	279	298	0.92
Non-Cytoplasmic	299	324	0.83
Transmembrane Helix	325	348	0.85
Cytoplasmic	349	357	0.75
Transmembrane Helix	358	380	0.79
Non-Cytoplasmic	381	398	0.79
Transmembrane Helix	399	420	0.89
Cytoplasmic	421	431	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVGTLTLLL FAIFILLFLL NVPIAISLGT AAVIILYLSG KFTLYFIVQR MFASLLSPPL  60
   61 IAIPAFVAAG VIMSRGGIAR YLIEALKAWI GHLPGGMSVV TILACAFFAA ISGSSPATAA 120
  121 AIGSIMLPAL LESGYPKRYS MGLIAAAGTL GILIPPSVTL VIYGITAEES IGKLFMGGLL 180
  181 PGLFLAGVLV LSAIIYAKRG NFKGAEKADW ATRIKATVKA LPGMFLPVFI LGSIYSGIVT 240
  241 PTEAAVLSLF YALFVSVFIY RELKLQDIRG ILVDTINTVS MIYLVIAAAM VFGLFIVTNQ 300
  301 IPNIVGEWIK NANLTKFTFF LATNLMFFIM GTFLEAVSIT LITLPILLPM IKHLGIDLIQ 360
  361 FAIVMTVNME LAMITPPVGL NLFVVSNMAK EKLEEVVKGV IPFIVIMILV MILLMVWPDI 420
  421 SLYIPRVLMK D