YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043316, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	25	0.87
Non-Cytoplasmic	26	29	0.75
Transmembrane Helix	30	49	0.78
Cytoplasmic	50	50	0.37
Transmembrane Helix	51	75	0.66
Non-Cytoplasmic	76	79	0.43
Transmembrane Helix	80	101	0.84
Cytoplasmic	102	179	0.55
Transmembrane Helix	180	201	0.85
Non-Cytoplasmic	202	211	0.67
Transmembrane Helix	212	233	0.90
Cytoplasmic	234	265	0.72
Transmembrane Helix	266	281	0.86
Non-Cytoplasmic	282	287	0.61
Transmembrane Helix	288	307	0.84
Cytoplasmic	308	318	0.68
Transmembrane Helix	319	342	0.86
Non-Cytoplasmic	343	352	0.60
Transmembrane Helix	353	372	0.90
Cytoplasmic	373	379	0.57
Transmembrane Helix	380	407	0.76
Non-Cytoplasmic	408	439	0.53
Transmembrane Helix	440	460	0.94
Cytoplasmic	461	466	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKIRALLT CAVGLAIWFS PIPTGLDPKA WHLLAIFVAT IIGFILQPLP IGAIAFISVT  60
   61 LSALTGILDA KAALAGFANS TIWLIVSAFI FAIGFVKTGL GLRIAYYLIR LLGDSTLKLG 120
  121 YTLVLSDLII SPATPSNTAR AGGVLFPIVR SLAEAFGSKP GESPRKVGAY LMQTAYQGNA 180
  181 ITSAMFLTSM AGNPLIALLA LKTLKIDITW NLWAKAAIVP GIISILVIPY LLYKIYPPEI 240
  241 KKTPEAKEIA AKELVKMGPM KFEEKVLAIV FIGALILWAT SQYTKIDATI VAMLGVSAML 300
  301 VAKVIDWKDV LAEKGAWDTL VWMGVLVALA GNLSELGFIP WFAKNVGNMI SGISWFWAFV 360
  361 ILLVVYLYAH YGFASLTAHI TAMYAAFASV AVAAGAPPYL VALSLAFMSN LCMSLTHYAA 420
  421 GPSPIYFGAG YVDQGTWWKL GFIVSIVNLF IWVGIGAVWW KALGLW