YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78042995, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	40	0.91
Non-Cytoplasmic	41	46	0.78
Transmembrane Helix	47	66	0.87
Cytoplasmic	67	81	0.74
Transmembrane Helix	82	104	0.84
Non-Cytoplasmic	105	107	0.65
Transmembrane Helix	108	127	0.73
Cytoplasmic	128	131	0.64
Transmembrane Helix	132	150	0.71
Non-Cytoplasmic	151	167	0.72
Transmembrane Helix	168	191	0.89
Cytoplasmic	192	223	0.86
Transmembrane Helix	224	258	0.66
Non-Cytoplasmic	259	271	0.54
Transmembrane Helix	272	294	0.81
Cytoplasmic	295	307	0.58
Transmembrane Helix	308	330	0.82
Non-Cytoplasmic	331	356	0.59
Transmembrane Helix	357	383	0.84
Cytoplasmic	384	397	0.59
Transmembrane Helix	398	420	0.92
Non-Cytoplasmic	421	423	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIAIAVFLV SYLFIITEKI NRTAIALLGG TVILITGTLT QEEAIHYIDW NTLGLLLGMM  60
   61 IIVDLTKHSG LFEYLALKAV HLTRANPIAL LIVLGLITAF LSAILDNVTT VLLIVPVALT 120
  121 ITRALNISPY PFLINQILMS NIGGTATLIG DPPNIMIGSQ THLGFIDFLI NLSPVVLVIL 180
  181 IVTSTIFYFL FRKSFAVDDK LKQNLLALDP KDKITDYLLL KKSLIIIALT ILGFSLHQLF 240
  241 HLESATVALF MAMVFLAISG KDIEHVLLGV EWPTIFFFLG LFIMVGALEE TGVIHKIAVW 300
  301 GLELTKGNVY LTGVFILWVS AIASAFIDNI PFVATMIPLI KTMGNLAAFS PEVMESFWWS 360
  361 LALGACLGGN GTIIGASANV IVAGIAEKEG YPISYGRYFV YGFPLMLLSI IISMVYLTLF 420
  421 YFM