YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78042994, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.88
Transmembrane Helix	6	25	0.96
Cytoplasmic	26	45	0.88
Transmembrane Helix	46	68	0.89
Non-Cytoplasmic	69	76	0.70
Transmembrane Helix	77	96	0.91
Cytoplasmic	97	116	0.91
Transmembrane Helix	117	136	0.93
Non-Cytoplasmic	137	153	0.82
Transmembrane Helix	154	174	0.92
Cytoplasmic	175	182	0.70
Transmembrane Helix	183	203	0.91
Non-Cytoplasmic	204	233	0.94
Transmembrane Helix	234	257	0.88
Cytoplasmic	258	266	0.95
Transmembrane Helix	267	290	0.91
Non-Cytoplasmic	291	325	0.96
Transmembrane Helix	326	354	0.83
Cytoplasmic	355	375	0.91
Transmembrane Helix	376	395	0.95
Non-Cytoplasmic	396	401	0.78
Transmembrane Helix	402	424	0.90
Cytoplasmic	425	430	0.81
Transmembrane Helix	431	451	0.93
Non-Cytoplasmic	452	465	0.78
Transmembrane Helix	466	484	0.90
Cytoplasmic	485	509	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINLAFTLF SIIVLITLII TYWAAKRTKT TSEFYAAGRS ITGWQNGIAV AGDYMSAASF  60
   61 LGIAGLICLY GYDGFMYSVG WLVAYLTVLL VVAEPLRNSG KYTMADVLAY RMNNKTVRSV 120
  121 AALSTITVSL FYMIAQMVGS GNLIKLLLGW KYETAIIVVG LLMILYVVFG GMLATTWVQI 180
  181 IKAVLLMTGT IVLSIAVLAH FDFSLVKFMG AVSQKYGQSF LEPGNLYKNP LDQISLGIAL 240
  241 IFGTAGLPHI LVRFYTVPNA KEARKSVVWA MVIIGAFYIM TTFLGFGAAY FVGQDVVKSF 300
  301 DKGGNMAAPL LAQYIGGGPG TVGGEFFLAF IAAVAFATIL AVVAGLTISA SSAFAHDFYT 360
  361 NVLRGGKASE AEQVKVARLT ALTVGILSIL IGILAKGMNV AHLVALAFAV ASSANLPVIV 420
  421 LSMFWKRFNT AGVVTGILTG LIASVGLVMI GPDVMGKEAI FPLKNPGIVS VPLGFLGAIL 480
  481 GSYLKVEKVA EEKFAELAVR ANTGLGAEM