YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76880449, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSVAGNML LRAAWRRASL AATSVALRRS SVPTRGLRLR VVDHAPHSAV PSEAEAVLRP  60
   61 LYMDVQATTP LDPRVLDAML PYLVNYYGNP HSRTHAYGWE SEAAMERARQ QVASLIGADP 120
  121 REIIFTSGAT ESNNIAIKGV ARFYRSRKKH LVTTQTEHKC VLDSCRSLEA EGFRVTYLPV 180
  181 QKSGIIDLKE LEAAIQPDTS LVSVMTVNNE IGVKQPIAEI GQICSSRKLY FHTDAAQAVG 240
  241 KIPLDVNDMK IDLMSISGHK LYGPKGVGAI YIRRRPRVRV EALQSGGGQE RGMRSGTVPT 300
  301 PLVVGLGAAC ELAQQEMEYD HKRISKLAER LIQKIMKNLP DVVMNGDPKQ HYPGCINLSF 360
  361 AYVEGESLLM ALKDVALSSG SACTSASLEP SYVLRAIGTD EDLAHSSIRF GIGRFTTEEE 420
  421 VDYTVQKCIH HVKRLREMSP LWEMVQDGID LKSIKWTQH

Type	Start	End	Confidence
Signal Peptide	1	36	0.67
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	459	0.99