YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62632705, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	709	0.99
Transmembrane Helix	710	732	0.90
Cytoplasmic	733	743	0.87
Transmembrane Helix	744	765	0.83
Non-Cytoplasmic	766	795	0.84
Transmembrane Helix	796	817	0.91
Cytoplasmic	818	826	0.71
Transmembrane Helix	827	842	0.96
Non-Cytoplasmic	843	886	0.92
Transmembrane Helix	887	905	0.96
Cytoplasmic	906	920	0.88
Transmembrane Helix	921	941	0.86
Non-Cytoplasmic	942	975	0.94
Transmembrane Helix	976	997	0.93
Cytoplasmic	998	1017	0.87
Transmembrane Helix	1018	1038	0.93
Non-Cytoplasmic	1039	1047	0.61
Transmembrane Helix	1048	1063	0.59
Cytoplasmic	1064	1077	0.57
Transmembrane Helix	1078	1097	0.72
Non-Cytoplasmic	1098	1101	0.65
Transmembrane Helix	1102	1122	0.91
Cytoplasmic	1123	1149	0.80
Transmembrane Helix	1150	1168	0.83
Non-Cytoplasmic	1169	1171	0.49
Transmembrane Helix	1172	1191	0.75
Cytoplasmic	1192	1228	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPQDASDV TSAAGLTRHL PIALQPPPQR CDDEDEGDLN KTLGVQRFQQ ILTPPQRVPT  60
   61 EQHRTFNEED FEYHRHTSLH IHHPLSKHLP DGRRKKPGRK RKDSGRRRSS SMGAAPPIDE 120
  121 DDEDEEADED SCSQQDREGN VTTTPTPDTD TEDRERAQFF VSEDDPKKNG EVSSHRKPSI 180
  181 TSHSKLHTSI SIPEDVTGAS GRRWGRIPPN GRRVSAPCLF PSVSSPDGSC KTGRSYDLQE 240
  241 RRRTGNMTGA TLSHYQQMPT DESEAKTLAT VDLDGIKSHR FEDVPGVRRH LVKKSAKGQV 300
  301 VHIGKDYKEF SSRIRTKLDR TPHEVFVELN ELLMDKNQEM HWKETARWIK FEEDVEEETE 360
  361 RWGKPHVASL SFRSLLELRK TISHGAVLLD LDQKTLPGIA HQVVEQMIIS DQIRAHDRAN 420
  421 VLRALLLKHS HPSDGKEHSL FNRNISATSL GSLISHYHST NHIGAPELPA TDPLIGGLRN 480
  481 FESRSSVDYV EKNEKDSPQF FGLHKTKSKH ELKLLEKIPE DAEATVVLVG CVDFLDQPTM 540
  541 AFVRLKEAVL LESVLEVPIP VRFLFVLLGP PSANIDYHQI GRSISTLMSD KHFHEAAYLA 600
  601 DGRQDLLTAI NSFLDCSIVL PPSEVGGDEL LHSIARFQKE MLHKRHEQEV KLQAKEPKSP 660
  661 DDIALQPPLK PEDDPLRRTG RLFGGVIRDV RRRYPKYISD FKDALSPQCM ATVIFIYFAA 720
  721 LSPAVTFGGL LGEKTDGLIG VSELIISTAV QGMLFCLLGA QPLLIVGFSG PLLVFEEAFY 780
  781 SFCKSNDLEY LTGRMWIGMW LIIIVLLTVA FEGSFLVRFV SRFTQEIFSI LISLIFIYET 840
  841 FFKLGKIFMD HPLRSCSGPE ENATSLSTGS NDSRSTGASQ TLNQPNTALL SLVLTSGTFF 900
  901 IAYYLRKFKN SAFFPGRLRR AIGDFGVPIA ISTMVLLDYS IKDTYTQKLN VPDGFSVTSP 960
  961 DKRGWLIHPL GSDGQFPIWM MGACILPALL VYILIFMETQ ITTLIVSKKE RMLVKGSGFH1020
 1021 LDLLIIVVSG GIAALFGLPW LTGATVRSVT HANSLTVMSK AVAPGDKPRI QEVKEQRVTG1080
 1081 FLVALLVGLS IVIGDLLRQV PIAVLFGIFL YMGVMSLNGI QLTERMMLLF MPPKYHPDHT1140
 1141 YVRKVRTLRM HLFTCLQLVC LAVLWIVMST AASLAFPFVL VLTVPFRRFL LSRIFSHREI1200
 1201 QCLDADDAEP TLDDKDGQDE YTEMQMPV