YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76646012
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHAALDGPFF VAQGLTGSHN VTPAQRKAPL PASTQGPRVS PVYLTGVIWF PKCKPIQSSF  60
   61 KKSRRAASSA LLNRLTLGGS AALRNCFWKR GHQFNWQNVS WAMVPGEAAS GLPVSRVGGY 120
  121 AGARLTRTRE AHRPGCVCAC VCQPEPADVS GLPGTRECGG RWDDGQDRRE QAEPQGLLCL 180
  181 GATEEPDGEA ATLDHWAPGG LPPTDSRHRE DRPSGPSRPR PHTRTPTGNG PPAAEEESAI 240
  241 PKGQGFWPMG LRALLDAGQC LEMLLSVTVV RVRHLAEQAK ETRLEAGTGF CSMMSAVDKP 300
  301 SLAEQHRPSE QTATPLAETL LPGPWTLTVA LLILTATVLV VPTHPPHFTA RVTRISRKML 360
  361 NLGSSNGRKA RREGAHPRVT EALWVKCLRQ GLPKEYSTEF RPRAPRLVAM PRKIEEIKDF 420
  421 LLTARRKDAK SVKIKKNKDN VKFKVRCSRY LYTLVITDKE KAEKLKQSLP PGLAVKELK

Type	Start	End	Confidence
Non-Cytoplasmic	1	324	0.86
Transmembrane Helix	325	348	0.51
Cytoplasmic	349	479	0.51