YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76630103
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.20
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.97
Transmembrane Helix	42	64	0.80
Non-Cytoplasmic	65	73	0.68
Transmembrane Helix	74	99	0.70
Cytoplasmic	100	109	0.90
Transmembrane Helix	110	131	0.92
Non-Cytoplasmic	132	141	0.84
Transmembrane Helix	142	167	0.79
Cytoplasmic	168	181	0.82
Transmembrane Helix	182	200	0.85
Non-Cytoplasmic	201	226	0.84
Transmembrane Helix	227	249	0.92
Cytoplasmic	250	279	0.77
Transmembrane Helix	280	301	0.71
Non-Cytoplasmic	302	314	0.79
Transmembrane Helix	315	337	0.87
Cytoplasmic	338	343	0.85
Transmembrane Helix	344	365	0.81
Non-Cytoplasmic	366	367	0.49
Transmembrane Helix	368	390	0.75
Cytoplasmic	391	410	0.54
Transmembrane Helix	411	434	0.75
Non-Cytoplasmic	435	455	0.50
Transmembrane Helix	456	478	0.89
Cytoplasmic	479	572	0.54
Transmembrane Helix	573	588	0.20
Non-Cytoplasmic	589	696	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVYREAIPG PALETPSTSL EAHTSAQGSD SGAGRLSFYR KLCYGIGGVP NQVASSAIAF  60
   61 YLQLFLLDVA QIPAAQVSLV LFGGKVSGAA ADPLAGFLIN RSRRTGSGRL MPWVLGCMPF 120
  121 IALAYFFLWF LPPFTTLRGL WYTTLYCLFQ ALATFFQVPY TALTMLLTPN PKERDSATAY 180
  181 RMTLEMAGTL MGATVHGLIV SGAHGSHRCK EDTLPGEGAV SPNATRLYFI AATVVALTYP 240
  241 VCSTLLYLGV KERSDPSTPA SGQGLGFLAG LGLTVRHRPY LNLVISFLFI SAAVQVEQSY 300
  301 LVLFCTHASQ LQDHVQGMVL TILVSAVLST PMWEWVLQRF GKRMSALGIC AMVPFAILLA 360
  361 AVPMVPVAYV VAFVSGLSIA VSLLLPWSML PDVVDDFQLQ HQHGPGLETI FYSSYVFFTK 420
  421 LSGAGALGIS TLSLDFAGYE SGACRQSEQV VVTLKVLIGA VPTSMILIGL CILMVGPTPK 480
  481 VPSRANSRSL GRARTQLPHD DTLLVLDSEQ KNQFPAACGA HRPRIRSPKA DSGSIGSQSP 540
  541 VGPDSSRTSS DSAVAAGRRA GVPAGQGRSR AGVGAAAGTL GGGASGTAMG VEIETISPGD 600
  601 GRTFPKKGQT CVVHYTGMLQ NGKKFDSSRD RNKPFKFRIG KQEVIKGFEE GAAQMSLGQR 660
  661 AKLTCTPDVA YGATGHPGVI PPNATLIFDV ELLNLE