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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76626437
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRRGVAAFA GPVRSRRCWP RSRDRWGDND RPAARGKDAK SLYGAVVHAH ACCSYWVHAL  60
   61 ALLFVSTFPE LYIKRSYLVL LPGSEDSAAA MLSRLFRMHG LFVASHPWEV IVGTVTLTIC 120
  121 MMSMNMFTGN NKICGWNYEC PKLEEDVLSS DIIILTITRC IAILYIYFQF QNLRQLGSKY 180
  181 ILGIAGLFTI FSSFVFSTVV IHFLDKELTG LNEALPFFLL LVDLSRASAL AKFALSSNSQ 240
  241 DEVRENIARG MAILGPTFTL DALVECLVIG VGTMSGVRQL EIMCCFGCMS VLANYFVFMT 300
  301 FFPACVSLVL ELSRESREGR PIWQLSHFAR VLEEEENKPN PVTQRVKMIM SLGLVLVHAH 360
  361 SRWIADPSPQ NSTADNSKVS LGLDENVSKR IEPSVSLWQF YLSKMISMDI EQVITLSLAL 420
  421 LLAVKYIFFE QAETESTLSL KNPITSPVVT QKKITDDCCR RDPVLVRNDQ KFHAMEEETR 480
  481 KNRERKVEVI KPLLAENDTS HRATFVVGNS SLLGTSLELE TQEPEMELPV EPRPNEECLQ 540
  541 ILENAEKGAK FLSDAEIIQL VNAKHIPAYK LETLMETHER GVSIRRQLLS KKLPEPSSLQ 600
  601 YLPYRDYNYS LVMGACCENV IGYMPIPVGV AGPLCLDGKE FQVPMATTEG CLVASTNRGC 660
  661 RAIGLGGGAS SRVLADGMTR GPVVRFPRAC DSAEVKAWLE TPEGFTVIKE AFDSTSRFAR 720
  721 LQKLHMSVAG RNLYIRFQSR SGDAMGMNMI SKGTEKALSK LQEYFPEMQI LAVSGNYCTD 780
  781 KKPAAINWIE GRGKSVVCEA VIPAKVVREV LKTTTEAMIE VNINKNLVGS AMAGSIGGYN 840
  841 AHAANIVTAI YIACGQDAAQ NVGSSNCITL MEASGPTNED LYISCTMPSI EIGTVGGGTN 900
  901 LLPQQACLQM LGVQGACRDN PGENARQLAR IVCGTVMAGE LSLMAALAAG HLVRSHMIHN 960
  961 RSKINLQDLQ GTCTKKAA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle