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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76622246
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.10
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPPIGKCSM IDFGQLLGQS FCPSAMPPPH STPLETNGVG EKATSPSSSL GLHCLIHKMA  60
   61 PWKTRGNFTG PMPRLSTYYG YFAYEAVTSE ATLSLYQGPW VLDVKDSANY TCVAMSSLGV 120
  121 IEAVAQITVK SLPKAPGTPV VTENTATSIT ITWDSGNPDP VSYYVIEYKS KSQDGPYQIK 180
  181 EDITTTRYSI GGLSPNSEYE IWVSAVNSIG QGPPSESVVT RTGEQAPASA PRNVQARMLS 240
  241 ATTMIIQWEE PVEPNGLIRG YRIYYTMEPE HPVGNWQKHN VDDSLLTTVG SLLEDETYTV 300
  301 RVLAFTSVGD GPLSDPIQVK TQQGVPGQPM NFRAEAKSET SIGLSWSPPR QESIIKYELL 360
  361 YREGDHGREV ARTFDPATAF VVDDLKPNTE YAFRLAARSP QGLGAFTSVV RQRTLQSKPS 420
  421 APPQDVKCVS TRSTAILVSW RPPPPDTHNG ALVSYSVRYR PLGSEDPQPK EVNGIPPTTT 480
  481 QILLEALDKW TEYRITAVAH TEVGPGPESS PVVVRTDEDV PSAPPRKVEA EALNATAIRV 540
  541 LWRSPAPGRQ HGQIRGYQVH YVRMEGAEAR GPPRIKDIML ADAQEMVITN LQPETAYSIT 600
  601 VAAYTMKGDG ARSKPKVVVT KGAVLGRPTL SVQQTPEGSL LARWEPPAGA TEDEVLGYRL 660
  661 QFGREDSSPL ATLEFPPTED HYTASGVHKG ATYVFRLAAR SRGGLGEEAA EVLSIPEDTP 720
  721 RGHPQILEAA GNATAGTVLL RWLPPVPAER NGAIIKYTVA VREAGALGPA QETELPAAAE 780
  781 PGAENVLTLQ GLKPDTAYDL QVRAHTRRGP GPYSPPVRYR TFLRDQVSPK NFKVKMIMKT 840
  841 SVLLSWEFPD NYNSPTPYKI QYNGLTLDVD GRTTKKLITH LKPNTFYNFV LTNRGSSLGG 900
  901 LQQTVTAWTA FNLLSSKPSV TPKPDSDGFI VVYLPDGQSP VPVQNYFIVM VPLRKSRGGQ 960
  961 FLTPLGSPED MDLEELIQDI ARLQRRSLRH SRQLEVPRPY IAARFSVLPH TFHPGDQKQY1020
 1021 GGFDNRGLEP GHRYVLFVLA VLQKSEPTFA ASPFSDPFQL DNPDPQPIVD GEEGLIWVIG1080
 1081 PVLAVVFIIC IVIAILLYKN KRKDSEPRTK CLLNNADLAP HHPKDPVEMR RINFQTPGMR1140
 1141 RGNGAGSRDA GHRCVSKYMR EAGGPTSQID TSLSPLRRGP WGSTQGLGTN SSSVVNLASP1200
 1201 YRFNTGAWDR APPLISSFSA TPGLGIVGSD YINANYVDGY RRQNAYIATQ GPLPETFGDF1260
 1261 WRMVWEQRSA TIVMMTRLEE KSRIKCDQYW PNRGTETYGF IQVTLLDTIE LATFCVRTFS1320
 1321 LHKSGSSEKR EVRQFQFTAW PDHGVPEYPT PFLAFLRRVK TCNPPDAGPI VVHCSAGVGR1380
 1381 TGCFIVIDAM LERIKPEKTV DVYGHVTLMR SQRNYMVQTE DQYSFIHEAL LEAVGCGNTE1440
 1441 VPARSLYAYI QKLTQVEPGE HVTGMELEFK RLANSKAHTS RFISANLPCN KFKNRLVNIM1500
 1501 PYESTRVCLQ PIRGVEGSDY INASFIDGYR QQKAYIATQG PLAETTEDFW RMLWENNSTI1560
 1561 VVMLTKLREM GREKCHQYWP AERSARYQYF VVDPMAEYNM PQYILREFKV TDARDGQSRT1620
 1621 VRQFQFTDWP EQGVPKSGEG FIDFIGQVHK TKEQFGQDGP ITVHCSAGVG RTGVFITLSI1680
 1681 VLERMRYEGV VDIFQTVKML RTQRPAMVQM EDEYQFCYQA ALEYLGSFDH YAT

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